Transcript : dd_Smed_v6_1642_0_1 S. mediterranea

Length  958     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967592.1, clone NBE.3.05A mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003745.1 Homo sapiens eukaryotic translation initiation factor 3 subunit F 2.0E-62 85-885 801 1
NP_079620.2 Mus musculus eukaryotic translation initiation factor 3, subunit F 9.0E-62 85-885 801 1
NP_001016190.1 Xenopus tropicalis eukaryotic translation initiation factor 3 subunit F 3.0E-70 85-885 801 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01398 PFAM IPR000555 JAB1/Mov34/MPN/PAD-1 ubiquitin protease 4.4E-18 73-369 297 1
PTHR10540:SF6 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1.5E-90 61-876 816 1
SM00232 SMART IPR000555 JAB/MPN domain 2.6E-17 82-477 396 1
PTHR10540 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1.5E-90 61-876 816 1
PF13012 PFAM IPR024969 Maintenance of mitochondrial structure and function 4.1E-12 544-876 333 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
67-891 825 1
96-278 183 -1
2-115 114 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101517 5.6E-111 1 370.7 0.83716077 84-885 802 1

Expression Information

Planmine Rnai Result Displayer

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)