Contig : dd_Smed_v6_1642_0_1 S. mediterranea

Id  dd_Smed_v6_1642_0_1 Length  958    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_003745.1 Homo sapiens eukaryotic translation initiation factor 3, subunit F 2.0E-62 85-885 801 1
NP_079620.2 Mus musculus eukaryotic translation initiation factor 3, subunit F 9.0E-62 85-885 801 1
NP_001016190.1 Xenopus (Silurana) tropicalis eukaryotic translation initiation factor 3, subunit F 3.0E-70 85-885 801 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01398 PFAM IPR000555 JAB1/Mov34/MPN/PAD-1 ubiquitin protease 4.4E-18 73-369 297 1
PTHR10540:SF6 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1.5E-90 61-876 816 1
SM00232 SMART IPR000555 JAB/MPN domain 2.6E-17 82-477 396 1
PTHR10540 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1.5E-90 61-876 816 1
PF13012 PFAM IPR024969 Maintenance of mitochondrial structure and function 4.1E-12 544-876 333 1

3 ORFs

Contig Location Length Strand Sequence
67-891 825 1
96-278 183 -1
2-115 114 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101517 5.6E-111 1 370.7 0.83716077 84-885 802 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)