Transcript : dd_Smed_v6_163_0_1 S. mediterranea

Length  905     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067198.1, clone H.85.12c unknown mRNA sequence
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000997.1 Homo sapiens ribosomal protein S3A 6.0E-91 149-865 717 1
NP_058655.3 Mus musculus ribosomal protein S3A1 1.0E-90 149-865 717 1
XP_006735747.1 Leptonychotes weddellii 40S ribosomal protein S3a-like 4.0E-91 149-865 717 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11830 PANTHER 40S RIBOSOMAL PROTEIN S3A 9.9E-126 74-862 789 1
PF01015 PFAM IPR001593 Ribosomal S3Ae family 1.2E-69 125-748 624 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
80-865 786 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300037 1.7E-121 2 405.8 0.8662983 81-864 784 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)