Contig : dd_Smed_v6_163_0_1 S. mediterranea

Id  dd_Smed_v6_163_0_1 Length  905    Open in Genome Browser

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3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000997.1 Homo sapiens ribosomal protein S3A 6.0E-91 149-865 717 1
NP_058655.3 Mus musculus ribosomal protein S3A1 1.0E-90 149-865 717 1
XP_006735747.1 Leptonychotes weddellii 40S ribosomal protein S3a-like 4.0E-91 149-865 717 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11830 PANTHER 40S RIBOSOMAL PROTEIN S3A 9.9E-126 74-862 789 1
PF01015 PFAM IPR001593 Ribosomal S3Ae family 1.2E-69 125-748 624 1

1 ORFs

Contig Location Length Strand Sequence
80-865 786 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300037 1.7E-121 2 405.8 0.8662983 81-864 784 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)