Contig : dd_Smed_v6_163_0_1 S. mediterranea

Id  dd_Smed_v6_163_0_1 Length  905    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000997.1 Homo sapiens ribosomal protein S3A 6.0E-91 149-865 717 1
NP_058655.3 Mus musculus ribosomal protein S3A1 1.0E-90 149-865 717 1
XP_006735747.1 Leptonychotes weddellii 40S ribosomal protein S3a-like 4.0E-91 149-865 717 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11830 PANTHER 40S RIBOSOMAL PROTEIN S3A 9.9E-126 74-862 789 1
PF01015 PFAM IPR001593 Ribosomal S3Ae family 1.2E-69 125-748 624 1

1 ORFs

Contig Location Length Strand Sequence
80-865 786 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300037 1.7E-121 2 405.8 0.8662983 81-864 784 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)