Transcript : dd_Smed_v6_161_0_1 S. mediterranea

Length  1059     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967679.1, clone NBE.7.07G mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524211.1 Drosophila melanogaster Ribosomal protein LP0 8.0E-91 92-877 786 1
NP_000993.1 Homo sapiens ribosomal protein lateral stalk subunit P0 6.0E-82 92-877 786 1
XP_005107960.1 Aplysia californica 60S acidic ribosomal protein P0 1.0E-96 92-877 786 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21141:SF3 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1.9E-123 74-1006 933 1
PF00428 PFAM IPR001813 60s Acidic ribosomal protein 5.0E-13 755-1003 249 1
PF00466 PFAM IPR001790 Ribosomal protein L10 4.6E-24 83-370 288 1
SSF160369 SSF Ribosomal protein L10-like 7.45E-17 74-457 384 1
PTHR21141 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1.9E-123 74-1006 933 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
77-1009 933 1
872-1057 186 -1
388-528 141 -1
567-674 108 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300849 1.3E-152 2 508.5 0.8677998 90-1008 919 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)