Contig : dd_Smed_v6_15_0_1 S. mediterranea

Id  dd_Smed_v6_15_0_1 Length  2154    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006588.1 Homo sapiens heat shock 70kDa protein 8 0.0 112-1947 1836 1
NP_077327.1 Rattus norvegicus heat shock 70kDa protein 8 0.0 112-1947 1836 1
NP_956908.1 Danio rerio heat shock cognate 70 0.0 112-1947 1836 1

31 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.30.30 GENE3D   2.0E-37 274-450 177 1
PS00329 PROSITE IPR018181 Heat shock hsp70 proteins family signature 2. 0.0 700-738 39 1
G3DSA:3.30.420.40 GENE3D   4.7E-39 718-798 81 1
G3DSA:3.30.420.40 GENE3D   4.7E-39 1057-1185 129 1
G3DSA:3.90.640.10 GENE3D Actin; Chain A, domain 4 6.5E-40 802-1041 240 1
G3DSA:1.20.1270.10 GENE3D IPR029048   9.3E-45 1666-1980 315 1
G3DSA:2.60.34.10 GENE3D IPR029047 Substrate Binding Domain Of DNAk; Chain A, domain 1 6.5E-68 1285-1662 378 1
PTHR19375:SF142 PANTHER HEAT SHOCK 70 KDA PROTEIN COGNATE 1-RELATED 0.0 112-2049 1938 1
SSF53067 SSF Actin-like ATPase domain 3.18E-69 685-1254 570 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 1198-1257 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 1522-1569 48 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 208-243 36 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 535-594 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 718-747 30 1
PS01036 PROSITE IPR018181 Heat shock hsp70 proteins family signature 3. 0.0 1111-1152 42 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 274-297 24 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 1279-1335 57 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 1102-1149 48 1
PTHR19375 PANTHER HEAT SHOCK PROTEIN 70KDA 0.0 112-2049 1938 1
PF00012 PFAM IPR013126 Hsp70 protein 7.6E-273 127-1944 1818 1
G3DSA:3.30.420.40 GENE3D   2.7E-69 478-714 237 1
G3DSA:3.30.420.40 GENE3D   2.7E-69 124-270 147 1
PS00297 PROSITE IPR018181 Heat shock hsp70 proteins family signature 1. 0.0 136-156 21 1
SSF100934 SSF IPR029048 Heat shock protein 70kD (HSP70), C-terminal subdomain 7.72E-31 1723-1965 243 1
SSF100920 SSF IPR029047 Heat shock protein 70kD (HSP70), peptide-binding domain 1.57E-65 1270-1737 468 1
SSF53067 SSF Actin-like ATPase domain 1.14E-70 127-669 543 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 3.1E-89 124-162 39 1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 1.1E-10 1483-1620 138 -1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 1.4E-11 1276-1401 126 -1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 2.5E-10 748-927 180 -1

7 ORFs

Contig Location Length Strand Sequence
112-2052 1941 1
1571-1717 147 1
573-701 129 -1
1530-1655 126 -1
632-739 108 1
1079-1186 108 1
1844-1951 108 -1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105046 1.3E-270 1 899.5 0.818013 120-1881 1762 1
TF354208 0.0 1 1416.7 0.8946147 126-2052 1927 1
TF105045 3.7E-199 1 663.3 0.6954503 126-1623 1498 1
TF105044 0.0 1 1198.0 0.85283196 129-1965 1837 1
TF105047 2.1E-140 1 468.4 0.52274835 132-1257 1126 1
TF105043 7.5E-112 1 373.8 0.5213556 132-1254 1123 1
TF105048 1.3E-71 1 240.6 0.49350047 192-1254 1063 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)