Contig : dd_Smed_v6_159_0_1 S. mediterranea

Id  dd_Smed_v6_159_0_1 Length  700    Open in Genome Browser

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Homologue Displayer

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006525078.1 Mus musculus peptidase inhibitor 16 5.0E-28 88-621 534 1
XP_005248974.1 Homo sapiens peptidase inhibitor 16 7.0E-28 88-621 534 1
XP_003731924.1 Strongylocentrotus purpuratus peptidase inhibitor 16-like 6.0E-40 88-621 534 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.33.10 GENE3D IPR014044 Pathogenesis-related Protein p14a 5.6E-59 82-618 537 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 2.2E-14 418-465 48 1
SM00198 SMART IPR001283 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. 3.4E-51 100-546 447 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 2.2E-14 508-546 39 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 8.7E-11 415-471 57 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 8.7E-11 343-387 45 1
PR00838 PRINTS IPR002413 Venom allergen 5 signature 8.7E-11 88-135 48 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 2.2E-14 199-252 54 1
SSF55797 SSF IPR014044 PR-1-like 7.72E-51 55-567 513 1
PTHR10334 PANTHER IPR001283 CYSTEINE-RICH SECRETORY PROTEIN-RELATED 9.5E-72 28-621 594 1
PS01010 PROSITE IPR018244 CRISP family signature 2. 0.0 508-540 33 1
PF00188 PFAM IPR014044 Cysteine-rich secretory protein family 8.0E-20 121-522 402 1
PR00837 PRINTS IPR001283 Allergen V5/Tpx-1 family signature 2.2E-14 349-387 39 1

6 ORFs

Contig Location Length Strand Sequence
1-624 624 1
55-264 210 -1
416-559 144 -1
524-658 135 1
212-340 129 1
368-472 105 1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352353 4.0E-16 1 57.4 0.72571427 105-612 508 1
TF313138 2.5E-28 1 98.2 0.64428574 111-561 451 1
TF350472 3.7E-22 1 78.6 0.60142857 174-594 421 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)