Contig : dd_Smed_v6_1580_0_1 S. mediterranea

Id  dd_Smed_v6_1580_0_1 Length  1560    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005902.1 Homo sapiens methionine adenosyltransferase II, alpha 0.0 239-1378 1140 1
NP_598414.1 Mus musculus methionine adenosyltransferase I, alpha 0.0 230-1378 1149 1
NP_599178.1 Rattus norvegicus methionine adenosyltransferase II, alpha 0.0 239-1378 1140 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF02772 PFAM IPR022629 S-adenosylmethionine synthetase, central domain 9.5E-50 575-940 366 1
G3DSA:3.30.300.10 GENE3D   9.5E-48 644-946 303 1
TIGR01034 TIGRFAMs IPR002133 metK: methionine adenosyltransferase 6.3E-189 248-1372 1125 1
G3DSA:3.30.300.10 GENE3D   2.9E-68 980-1372 393 1
G3DSA:3.30.300.10 GENE3D   6.5E-53 266-640 375 1
PTHR11964 PANTHER IPR002133 S-ADENOSYLMETHIONINE SYNTHETASE 0.0 233-1375 1143 1
SSF55973 SSF IPR022636 S-adenosylmethionine synthetase 3.92E-53 572-943 372 1
SSF55973 SSF IPR022636 S-adenosylmethionine synthetase 1.14E-49 242-559 318 1
SSF55973 SSF IPR022636 S-adenosylmethionine synthetase 5.49E-68 947-1372 426 1
PS00376 PROSITE IPR022631 S-adenosylmethionine synthase signature 1. 0.0 584-613 30 1
PF00438 PFAM IPR022628 S-adenosylmethionine synthetase, N-terminal domain 1.1E-43 242-535 294 1
PF02773 PFAM IPR022630 S-adenosylmethionine synthetase, C-terminal domain 2.0E-76 947-1357 411 1
PS00377 PROSITE IPR022631 S-adenosylmethionine synthase signature 2. 0.0 1025-1048 24 1

9 ORFs

Contig Location Length Strand Sequence
221-1378 1158 1
1005-1370 366 1
812-1171 360 -1
768-974 207 1
1006-1158 153 -1
948-1079 132 -1
1444-1560 117 -1
2-118 117 -1
1217-1330 114 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300511 7.6E-281 2 932.6 0.7237179 246-1374 1129 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)