Contig : dd_Smed_v6_1574_6_73 S. mediterranea

Id  dd_Smed_v6_1574_6_73 Length  1445    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003382176.1 Trichinella spiralis putative integrase core domain protein 3.0E-64 12-1067 1056 1
XP_004336571.1 Acanthamoeba castellanii str. Neff GapPol polyprotein 9.0E-60 12-1037 1026 1
XP_002431501.1 Pediculus humanus corporis enzymatic polyprotein, putative 2.0E-57 12-1004 993 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00665 PFAM IPR001584 Integrase core domain 4.1E-24 192-536 345 1
PTHR24559:SF165 PANTHER SUBFAMILY NOT NAMED 7.4E-72 24-1382 1359 1
PS50994 PROFILE IPR001584 Integrase catalytic domain profile. 25.081 189-665 477 1
SSF53098 SSF IPR012337 Ribonuclease H-like 4.68E-41 180-647 468 1
G3DSA:3.30.420.10 GENE3D IPR012337   1.2E-37 201-677 477 1
PTHR24559 PANTHER FAMILY NOT NAMED 7.4E-72 24-1382 1359 1

7 ORFs

Contig Location Length Strand Sequence
3-1445 1443 1
1-309 309 -1
2-157 156 1
711-851 141 -1
354-488 135 -1
520-645 126 -1
1334-1444 111 -1

9 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF343122 4.9E-93 3 311.4 0.5778547 6-840 835 1
TF322183 2.3E-6 3 22.7 0.46782008 9-684 676 1
TF323092 9.7E-74 3 248.3 0.59861594 12-876 865 1
TF352301 5.6E-54 3 182.8 0.5197232 12-762 751 1
TF344122 1.2E-70 3 236.4 0.59238756 24-879 856 1
TF329121 1.4E-64 3 216.6 0.5882353 24-873 850 1
TF352305 7.5E-51 3 170.7 0.5882353 30-879 850 1
TF342895 2.7E-15 3 53.3 0.44083044 30-666 637 1
TF323003 2.6E-35 3 119.6 0.56747407 57-876 820 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)