Contig : dd_Smed_v6_156_0_1 S. mediterranea

Id  dd_Smed_v6_156_0_1 Length  768    Open in Genome Browser

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Homologue Displayer

Organism Field Displayer


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3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001003.1 Homo sapiens ribosomal protein S8 5.0E-77 74-691 618 1
XP_006500609.1 Mus musculus 40S ribosomal protein S8-like 2.0E-74 71-691 621 1
NP_651740.1 Drosophila melanogaster Ribosomal protein S8 3.0E-74 74-691 618 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01201 PFAM IPR022309 Ribosomal protein S8e 5.0E-51 74-664 591 1
PTHR10394 PANTHER IPR001047 40S RIBOSOMAL PROTEIN S8 1.2E-131 77-718 642 1
TIGR00307 TIGRFAMs IPR001047 S8e: ribosomal protein S8.e 2.0E-43 74-670 597 1
PS01193 PROSITE IPR018283 Ribosomal protein S8e signature. 0.0 104-160 57 1

2 ORFs

Contig Location Length Strand Sequence
74-721 648 1
29-139 111 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300041 5.4E-99 2 330.2 0.8255208 87-720 634 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)