Transcript : dd_Smed_v6_156_0_1 S. mediterranea

Length  768     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067199.1, clone HB.5.5e unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001003.1 Homo sapiens ribosomal protein S8 5.0E-77 74-691 618 1
XP_006500609.1 Mus musculus 40S ribosomal protein S8-like 2.0E-74 71-691 621 1
NP_651740.1 Drosophila melanogaster Ribosomal protein S8 3.0E-74 74-691 618 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01201 PFAM IPR022309 Ribosomal protein S8e 5.0E-51 74-664 591 1
PTHR10394 PANTHER IPR001047 40S RIBOSOMAL PROTEIN S8 1.2E-131 77-718 642 1
TIGR00307 TIGRFAMs IPR001047 S8e: ribosomal protein S8.e 2.0E-43 74-670 597 1
PS01193 PROSITE IPR018283 Ribosomal protein S8e signature. 0.0 104-160 57 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
74-721 648 1
29-139 111 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300041 5.4E-99 2 330.2 0.8255208 87-720 634 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)