Contig : dd_Smed_v6_156_0_1 S. mediterranea

Id  dd_Smed_v6_156_0_1 Length  768    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001003.1 Homo sapiens ribosomal protein S8 5.0E-77 74-691 618 1
XP_006500609.1 Mus musculus 40S ribosomal protein S8-like 2.0E-74 71-691 621 1
NP_651740.1 Drosophila melanogaster Ribosomal protein S8 3.0E-74 74-691 618 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01201 PFAM IPR022309 Ribosomal protein S8e 5.0E-51 74-664 591 1
PTHR10394 PANTHER IPR001047 40S RIBOSOMAL PROTEIN S8 1.2E-131 77-718 642 1
TIGR00307 TIGRFAMs IPR001047 S8e: ribosomal protein S8.e 2.0E-43 74-670 597 1
PS01193 PROSITE IPR018283 Ribosomal protein S8e signature. 0.0 104-160 57 1

2 ORFs

Contig Location Length Strand Sequence
74-721 648 1
29-139 111 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300041 5.4E-99 2 330.2 0.8255208 87-720 634 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)