Transcript : dd_Smed_v6_1569_0_1 S. mediterranea

Length  1351     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: KJ573352.1, strain CIW4 clone 1B10 heterogeneous nuclear ribonucleoprotein K mRNA - complete cds
AY067246.1, clone HB.12.8a unknown mRNA sequence
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006513983.1 Mus musculus poly(rC) binding protein 3 4.0E-29 173-1249 1077 1
XP_006008965.1 Latimeria chalumnae heterogeneous nuclear ribonucleoprotein K 6.0E-52 146-1279 1134 1
XP_005522690.1 Pseudopodoces humilis heterogeneous nuclear ribonucleoprotein K 1.0E-49 146-1279 1134 1

17 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 7.16E-19 1043-1258 216 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 9.79E-11 179-385 207 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 1.46E-13 455-664 210 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 19.162 1043-1240 198 1
PF00013 PFAM IPR004088 KH domain 2.7E-9 464-643 180 1
PF00013 PFAM IPR004088 KH domain 4.9E-18 1055-1237 183 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 10.211 173-358 186 1
SM00322 SMART IPR004087 K homology RNA-binding domain 4.7E-5 170-373 204 1
G3DSA:3.30.1370.10 GENE3D IPR004088   3.0E-21 1055-1258 204 1
SM00322 SMART IPR004087 K homology RNA-binding domain 4.0E-16 1040-1255 216 1
SM00322 SMART IPR004087 K homology RNA-binding domain 4.7E-8 449-664 216 1
G3DSA:3.30.1370.10 GENE3D IPR004088   4.9E-17 446-661 216 1
PTHR10288 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 7.4E-69 176-1261 1086 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 12.978 452-649 198 1
PTHR10288:SF102 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K 7.4E-69 176-1261 1086 1
PF00013 PFAM IPR004088 KH domain 2.2E-8 182-316 135 1
G3DSA:3.30.1370.10 GENE3D IPR004088   6.4E-14 173-376 204 1

Genomics

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3 ORFs

Contig Location Length Strand Sequence
110-1279 1170 1
708-875 168 1
844-963 120 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF318292 9.4E-39 2 133.0 0.7912657 180-1248 1069 1
TF316335 2.6E-37 2 128.1 0.41598815 708-1269 562 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)