Contig : dd_Smed_v6_1566_0_1 S. mediterranea

Id  dd_Smed_v6_1566_0_1 Length  2624    Open in Genome Browser

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_032818.1 Mus musculus proprotein convertase subtilisin/kexin type 2 0.0 526-2418 1893 1
NP_477318.1 Drosophila melanogaster amontillado 0.0 526-2412 1887 1
NP_002585.2 Homo sapiens proprotein convertase subtilisin/kexin type 2 0.0 526-2334 1809 1

16 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00137 PROSITE IPR022398 Serine proteases, subtilase family, histidine active site. 0.0 1144-1173 30 1
PTHR10795 PANTHER IPR015500 PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 0.0 526-2370 1845 1
PS00136 PROSITE IPR023827 Serine proteases, subtilase family, aspartic acid active site. 0.0 1009-1041 33 1
SSF54897 SSF IPR009020 Protease propeptides/inhibitors 0.0 532-744 213 1
G3DSA:3.40.50.200 GENE3D IPR000209   4.0E-100 880-1899 1020 1
G3DSA:2.60.120.260 GENE3D IPR008979 Galactose-binding domain-like 9.199999999E-43 1903-2331 429 1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 7.699984805E-19 1132-1170 39 1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 7.699984805E-19 994-1050 57 1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 7.699984805E-19 1666-1713 48 1
PS00138 PROSITE IPR023828 Serine proteases, subtilase family, serine active site. 0.0 1669-1698 30 1
PTHR10795:SF11 PANTHER NEUROENDOCRINE CONVERTASE 2 0.0 526-2370 1845 1
G3DSA:3.30.70.850 GENE3D   1.9E-14 520-771 252 1
PF00082 PFAM IPR000209 Subtilase family 8.8E-54 1012-1887 876 1
PF01483 PFAM IPR002884 Proprotein convertase P-domain 6.2E-28 2044-2307 264 1
SSF52743 SSF IPR000209 Subtilisin-like 0.0 880-1905 1026 1
SSF49785 SSF IPR008979 Galactose-binding domain-like 0.0 1888-2331 444 1

14 ORFs

Contig Location Length Strand Sequence
472-2418 1947 1
1529-1759 231 1
3-197 195 -1
1660-1851 192 -1
1082-1243 162 1
201-344 144 -1
780-917 138 -1
2490-2624 135 -1
641-760 120 1
1793-1909 117 1
1139-1255 117 -1
1317-1430 114 -1
91-201 111 -1
2187-2291 105 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)