Transcript : dd_Smed_v6_1566_0_1 S. mediterranea

Length  2624     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: BK007043.1, TPA_inf: prohormone convertase 2 mRNA - complete cds
EST: AY067074.1, clone H.9.5e(T3) unknown mRNA sequence
AY967491.1, clone HE.2.02B mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_032818.1 Mus musculus proprotein convertase subtilisin/kexin type 2 0.0 526-2418 1893 1
NP_477318.1 Drosophila melanogaster amontillado 0.0 526-2412 1887 1
NP_002585.2 Homo sapiens proprotein convertase subtilisin/kexin type 2 0.0 526-2334 1809 1

16 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00137 PROSITE IPR022398 Serine proteases, subtilase family, histidine active site. 0.0 1144-1173 30 1
PTHR10795 PANTHER IPR015500 PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 0.0 526-2370 1845 1
PS00136 PROSITE IPR023827 Serine proteases, subtilase family, aspartic acid active site. 0.0 1009-1041 33 1
SSF54897 SSF IPR009020 Protease propeptides/inhibitors 0.0 532-744 213 1
G3DSA:3.40.50.200 GENE3D IPR000209   4.0E-100 880-1899 1020 1
G3DSA:2.60.120.260 GENE3D IPR008979 Galactose-binding domain-like 9.199999999E-43 1903-2331 429 1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 7.699984805E-19 1132-1170 39 1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 7.699984805E-19 994-1050 57 1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 7.699984805E-19 1666-1713 48 1
PS00138 PROSITE IPR023828 Serine proteases, subtilase family, serine active site. 0.0 1669-1698 30 1
PTHR10795:SF11 PANTHER NEUROENDOCRINE CONVERTASE 2 0.0 526-2370 1845 1
G3DSA:3.30.70.850 GENE3D   1.9E-14 520-771 252 1
PF00082 PFAM IPR000209 Subtilase family 8.8E-54 1012-1887 876 1
PF01483 PFAM IPR002884 Proprotein convertase P-domain 6.2E-28 2044-2307 264 1
SSF52743 SSF IPR000209 Subtilisin-like 0.0 880-1905 1026 1
SSF49785 SSF IPR008979 Galactose-binding domain-like 0.0 1888-2331 444 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

14 ORFs

Contig Location Length Strand Sequence
472-2418 1947 1
1529-1759 231 1
3-197 195 -1
1660-1851 192 -1
1082-1243 162 1
201-344 144 -1
780-917 138 -1
2490-2624 135 -1
641-760 120 1
1793-1909 117 1
1139-1255 117 -1
1317-1430 114 -1
91-201 111 -1
2187-2291 105 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)