Contig : dd_Smed_v6_15647_0_1 S. mediterranea

Id  dd_Smed_v6_15647_0_1 Length  1063    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_061221.2 Mus musculus sulfotransferase family, cytosolic, 1C, member 1 1.0E-45 224-1057 834 1
NP_001008743.1 Homo sapiens sulfotransferase family, cytosolic, 1C, member 3 2.0E-45 233-1057 825 1
XP_002811788.1 Pongo abelii sulfotransferase 1C3-like 2.0E-49 254-1039 786 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00685 PFAM IPR000863 Sulfotransferase domain 5.8E-56 287-1015 729 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 1.64E-66 209-1042 834 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.9E-78 209-1045 837 1
PTHR11783 PANTHER SULFOTRANSFERASE (SULT) 2.1E-88 179-1054 876 1

1 ORFs

Contig Location Length Strand Sequence
188-1057 870 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)