Contig : dd_Smed_v6_15643_0_1 S. mediterranea

Id  dd_Smed_v6_15643_0_1 Length  3133    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005266465.1 Homo sapiens protocadherin 9 3.0E-67 107-2446 2340 1
XP_005280942.1 Chrysemys picta bellii protocadherin 1 1.0E-69 173-2479 2307 1
XP_005496374.1 Zonotrichia albicollis protocadherin 1 1.0E-69 179-2479 2301 1

44 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS51004 PROFILE IPR001627 Sema domain profile. 8.654 1477-1602 126 1
SSF49313 SSF IPR015919 Cadherin-like 8.71E-9 1112-1462 351 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 13.181 1160-1486 327 1
SSF49313 SSF IPR015919 Cadherin-like 3.85E-12 488-811 324 1
SSF49313 SSF IPR015919 Cadherin-like 1.86E-6 278-508 231 1
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 1451-1480 30 1
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 1784-1813 30 1
SSF49313 SSF IPR015919 Cadherin-like 9.71E-23 1784-2146 363 1
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 2093-2122 30 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 6.3E-17 2183-2473 291 1
PTHR24027 PANTHER FAMILY NOT NAMED 4.5E-152 272-2473 2202 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 29.469 1490-1819 330 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 2.9E-10 503-817 315 1
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 473-502 30 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 22.366 842-1132 291 1
SM00112 SMART IPR002126 Cadherin repeats. 0.0093 1199-1480 282 1
SM00112 SMART IPR002126 Cadherin repeats. 8.5E-7 2246-2488 243 1
SM00112 SMART IPR002126 Cadherin repeats. 5.0E-16 905-1126 222 1
SM00112 SMART IPR002126 Cadherin repeats. 2.9E-17 1883-2122 240 1
SM00112 SMART IPR002126 Cadherin repeats. 7.6E-29 1553-1813 261 1
SM00112 SMART IPR002126 Cadherin repeats. 0.0093 578-832 255 1
SM00112 SMART IPR002126 Cadherin repeats. 0.013 254-502 249 1
PR00205 PRINTS IPR002126 Cadherin signature 2.4E-32 1481-1519 39 1
PR00205 PRINTS IPR002126 Cadherin signature 2.4E-32 1766-1816 51 1
PR00205 PRINTS IPR002126 Cadherin signature 2.4E-32 1658-1735 78 1
PR00205 PRINTS IPR002126 Cadherin signature 2.4E-32 839-925 87 1
PR00205 PRINTS IPR002126 Cadherin signature 2.4E-32 1424-1480 57 1
PR00205 PRINTS IPR002126 Cadherin signature 2.4E-32 308-364 57 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 14.408 2183-2473 291 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 15.636 584-838 255 1

6 ORFs

Contig Location Length Strand Sequence
77-2986 2910 1
1988-2149 162 -1
1321-1467 147 -1
91-219 129 1
2790-2897 108 -1
2893-2994 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF331335 3.5E-79 2 265.1 0.58729655 288-2127 1840 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)