Transcript : dd_Smed_v6_155_1_1 S. mediterranea

Length  555     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000981.1 Homo sapiens ribosomal protein L27a 6.0E-53 76-510 435 1
NP_036105.2 Mus musculus ribosomal protein L27A 8.0E-53 76-510 435 1
XP_007566085.1 Poecilia formosa ribosomal protein L27a 5.0E-57 37-510 474 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52080 SSF IPR021131 Ribosomal proteins L15p and L18e 1.07E-39 82-504 423 1
PS00475 PROSITE IPR001196 Ribosomal protein L15 signature. 0.0 394-486 93 1
PTHR11721 PANTHER 60S RIBOSOMAL PROTEIN L27A 5.8E-93 82-507 426 1
PTHR11721:SF3 PANTHER 60S RIBOSOMAL PROTEIN L27A 5.8E-93 82-507 426 1
PF00828 PFAM IPR021131 Ribosomal protein L18e/L15 3.2E-35 124-501 378 1
G3DSA:3.100.10.10 GENE3D   7.1E-16 142-504 363 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
64-510 447 1
100-252 153 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313742 3.0E-89 1 298.3 0.76396394 87-510 424 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)