Contig : dd_Smed_v6_155_1_1 S. mediterranea

Id  dd_Smed_v6_155_1_1 Length  555    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000981.1 Homo sapiens ribosomal protein L27a 6.0E-53 76-510 435 1
NP_036105.2 Mus musculus ribosomal protein L27A 8.0E-53 76-510 435 1
XP_007566085.1 Poecilia formosa ribosomal protein L27a 5.0E-57 37-510 474 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52080 SSF IPR021131 Ribosomal proteins L15p and L18e 1.07E-39 82-504 423 1
PS00475 PROSITE IPR001196 Ribosomal protein L15 signature. 0.0 394-486 93 1
PTHR11721 PANTHER 60S RIBOSOMAL PROTEIN L27A 5.8E-93 82-507 426 1
PTHR11721:SF3 PANTHER 60S RIBOSOMAL PROTEIN L27A 5.8E-93 82-507 426 1
PF00828 PFAM IPR021131 Ribosomal protein L18e/L15 3.2E-35 124-501 378 1
G3DSA:3.100.10.10 GENE3D   7.1E-16 142-504 363 1

2 ORFs

Contig Location Length Strand Sequence
64-510 447 1
100-252 153 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313742 3.0E-89 1 298.3 0.76396394 87-510 424 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)