Transcript : dd_Smed_v6_15498_0_18 S. mediterranea

Length  1049     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002431503.1 Pediculus humanus corporis enzymatic polyprotein. Endonuclease. Reverse transcriptase, putative 1.0E-80 4-807 804 1
XP_002012399.1 Drosophila mojavensis GI11945 gene product from transcript GI11945-RA 3.0E-65 4-807 804 1
XP_002121256.2 Ciona intestinalis zinc finger (CCHC)-26 3.0E-65 16-810 795 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.70.270 GENE3D   2.5E-5 10-165 156 1
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 4.4E-8 7-168 162 1
SSF56672 SSF DNA/RNA polymerases 1.67E-85 7-765 759 1
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 9.265 1-168 168 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
1-1047 1047 1
765-953 189 -1
282-452 171 -1
904-1047 144 -1

11 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF329121 1.8E-130 1 435.3 0.78455675 9-831 823 1
TF323003 2.6E-106 1 355.3 0.90467113 12-960 949 1
TF322183 2.2E-75 1 251.9 0.7588179 12-807 796 1
TF342365 5.8E-27 1 93.5 0.5958055 12-636 625 1
TF344122 1.7E-98 1 328.8 0.9647283 15-1026 1012 1
TF343122 6.5E-76 1 254.5 0.970448 15-1032 1018 1
TF352305 1.3E-66 1 223.0 0.70448047 15-753 739 1
TF324495 7.1E-34 1 115.1 0.6329838 15-678 664 1
TF352304 3.6E-109 1 365.7 0.66158247 24-717 694 1
TF342895 5.2E-39 1 131.9 0.7673975 24-828 805 1
TF352303 3.5E-96 1 323.6 0.5557674 258-840 583 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)