Contig : dd_Smed_v6_15498_0_18 S. mediterranea

Id  dd_Smed_v6_15498_0_18 Length  1049    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002431503.1 Pediculus humanus corporis enzymatic polyprotein. Endonuclease. Reverse transcriptase, putative 1.0E-80 4-807 804 1
XP_002012399.1 Drosophila mojavensis GI11945 gene product from transcript GI11945-RA 3.0E-65 4-807 804 1
XP_002121256.2 Ciona intestinalis zinc finger (CCHC)-26 3.0E-65 16-810 795 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.70.270 GENE3D   2.5E-5 10-165 156 1
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 4.4E-8 7-168 162 1
SSF56672 SSF DNA/RNA polymerases 1.67E-85 7-765 759 1
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 9.265 1-168 168 1

4 ORFs

Contig Location Length Strand Sequence
1-1047 1047 1
765-953 189 -1
282-452 171 -1
904-1047 144 -1

11 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF329121 1.8E-130 1 435.3 0.78455675 9-831 823 1
TF323003 2.6E-106 1 355.3 0.90467113 12-960 949 1
TF322183 2.2E-75 1 251.9 0.7588179 12-807 796 1
TF342365 5.8E-27 1 93.5 0.5958055 12-636 625 1
TF344122 1.7E-98 1 328.8 0.9647283 15-1026 1012 1
TF343122 6.5E-76 1 254.5 0.970448 15-1032 1018 1
TF352305 1.3E-66 1 223.0 0.70448047 15-753 739 1
TF324495 7.1E-34 1 115.1 0.6329838 15-678 664 1
TF352304 3.6E-109 1 365.7 0.66158247 24-717 694 1
TF342895 5.2E-39 1 131.9 0.7673975 24-828 805 1
TF352303 3.5E-96 1 323.6 0.5557674 258-840 583 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)