Transcript : dd_Smed_v6_15330_0_1 S. mediterranea

Length  1149     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_082740.1 Mus musculus molybdenum cofactor synthesis 1 1.0E-130 120-1100 981 1
NP_001068566.1 Homo sapiens molybdenum cofactor synthesis 1 2.0E-129 120-1100 981 1
XP_005503879.1 Columba livia molybdenum cofactor synthesis 1 3.0E-133 120-1100 981 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF06463 PFAM IPR010505 Molybdenum Cofactor Synthesis C 4.1E-36 666-1043 378 1
PTHR22960 PANTHER MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A 6.0E-167 120-1088 969 1
PTHR22960:SF0 PANTHER MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN 1 6.0E-167 120-1088 969 1
SSF102114 SSF Radical SAM enzymes 1.06E-72 120-950 831 1
TIGR02666 TIGRFAMs IPR013483 moaA: molybdenum cofactor biosynthesis protein A 1.1E-108 120-1097 978 1
PF04055 PFAM IPR007197 Radical SAM superfamily 1.6E-24 159-647 489 1
PF13353 PFAM 4Fe-4S single cluster domain 2.0E-7 168-482 315 1
PS01305 PROSITE IPR000385 moaA / nifB / pqqE family signature. 0.0 165-197 33 1
G3DSA:3.20.20.70 GENE3D IPR013785 Aldolase class I 3.9E-78 117-1028 912 1
SM00729 SMART IPR006638 Elongator protein 3, MiaB family, Radical SAM 1.2E-6 147-761 615 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
21-1100 1080 1
383-682 300 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300424 4.0E-193 3 643.9 0.85204524 120-1098 979 1
TF300085 0.003 3 16.7 0.410792 165-636 472 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)