Contig : dd_Smed_v6_15330_0_1 S. mediterranea

Id  dd_Smed_v6_15330_0_1 Length  1149    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_082740.1 Mus musculus molybdenum cofactor synthesis 1 1.0E-130 120-1100 981 1
NP_001068566.1 Homo sapiens molybdenum cofactor synthesis 1 2.0E-129 120-1100 981 1
XP_005503879.1 Columba livia molybdenum cofactor synthesis 1 3.0E-133 120-1100 981 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF06463 PFAM IPR010505 Molybdenum Cofactor Synthesis C 4.1E-36 666-1043 378 1
PTHR22960 PANTHER MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A 6.0E-167 120-1088 969 1
PTHR22960:SF0 PANTHER MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN 1 6.0E-167 120-1088 969 1
SSF102114 SSF Radical SAM enzymes 1.06E-72 120-950 831 1
TIGR02666 TIGRFAMs IPR013483 moaA: molybdenum cofactor biosynthesis protein A 1.1E-108 120-1097 978 1
PF04055 PFAM IPR007197 Radical SAM superfamily 1.6E-24 159-647 489 1
PF13353 PFAM 4Fe-4S single cluster domain 2.0E-7 168-482 315 1
PS01305 PROSITE IPR000385 moaA / nifB / pqqE family signature. 0.0 165-197 33 1
G3DSA:3.20.20.70 GENE3D IPR013785 Aldolase class I 3.9E-78 117-1028 912 1
SM00729 SMART IPR006638 Elongator protein 3, MiaB family, Radical SAM 1.2E-6 147-761 615 1

2 ORFs

Contig Location Length Strand Sequence
21-1100 1080 1
383-682 300 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300424 4.0E-193 3 643.9 0.85204524 120-1098 979 1
TF300085 0.003 3 16.7 0.410792 165-636 472 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)