Contig : dd_Smed_v6_15239_0_1 S. mediterranea

Id  dd_Smed_v6_15239_0_1 Length  1746    Open in Genome Browser

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Planmine Rnai Result Displayer

Planmine Anatomy Displayer

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Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001191579.1 Aplysia californica pannexin 2 2.0E-58 355-1503 1149 1
XP_003147443.1 Loa loa INX-1 protein 3.0E-52 364-1488 1125 1
XP_001899551.1 Brugia malayi Innexin unc-7 4.0E-52 364-1488 1125 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11893 PANTHER IPR000990 INNEXIN 4.1E-168 301-1605 1305 1
PTHR11893:SF0 PANTHER PROTEIN INX-15 4.1E-168 301-1605 1305 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 1090-1116 27 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 1162-1209 48 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 934-975 42 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 520-546 27 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 616-681 66 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 433-465 33 1
PS51013 PROFILE IPR000990 Pannexin family profile. 30.263 349-1497 1149 1
PF00876 PFAM IPR000990 Innexin 4.4E-97 364-1485 1122 1

8 ORFs

Contig Location Length Strand Sequence
301-1611 1311 1
434-640 207 -1
1020-1181 162 -1
1290-1442 153 -1
163-279 117 1
1471-1587 117 -1
34-144 111 1
465-575 111 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)