Transcript : dd_Smed_v6_15239_0_1 S. mediterranea

Length  1746     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067506.1, clone H.114.10f unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001191579.1 Aplysia californica pannexin 2 2.0E-58 355-1503 1149 1
XP_003147443.1 Loa loa INX-1 protein 3.0E-52 364-1488 1125 1
XP_001899551.1 Brugia malayi Innexin unc-7 4.0E-52 364-1488 1125 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11893 PANTHER IPR000990 INNEXIN 4.1E-168 301-1605 1305 1
PTHR11893:SF0 PANTHER PROTEIN INX-15 4.1E-168 301-1605 1305 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 1090-1116 27 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 1162-1209 48 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 934-975 42 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 520-546 27 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 616-681 66 1
PR01262 PRINTS IPR000990 Innexin signature 2.74E-27 433-465 33 1
PS51013 PROFILE IPR000990 Pannexin family profile. 30.263 349-1497 1149 1
PF00876 PFAM IPR000990 Innexin 4.4E-97 364-1485 1122 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
301-1611 1311 1
434-640 207 -1
1020-1181 162 -1
1290-1442 153 -1
163-279 117 1
1471-1587 117 -1
34-144 111 1
465-575 111 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)