Transcript : dd_Smed_v6_151_0_1 S. mediterranea

Length  1018     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067191.1, clone HB.23.5h unknown mRNA sequence
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001036387.1 Drosophila melanogaster Ribosomal protein L5 3.0E-87 78-962 885 1
NP_000960.2 Homo sapiens ribosomal protein L5 7.0E-81 78-938 861 1
NP_058676.1 Mus musculus ribosomal protein L5 2.0E-80 78-938 861 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 567-623 57 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 135-191 57 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 204-260 57 1
G3DSA:3.30.420.100 GENE3D   7.6E-81 111-824 714 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 507-563 57 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 327-386 60 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 690-749 60 1
SSF53137 SSF Translational machinery components 1.05E-58 111-410 300 1
PF00861 PFAM IPR005484 Ribosomal L18p/L5e family 1.9E-43 153-590 438 1
SSF53137 SSF Translational machinery components 1.05E-58 492-824 333 1
PTHR23410 PANTHER IPR005485 RIBOSOMAL PROTEIN L5-RELATED 7.8E-181 81-959 879 1
PF14204 PFAM IPR025607 Ribosomal L18 C-terminal region 3.3E-26 648-917 270 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
78-965 888 1
537-683 147 -1
373-477 105 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300044 4.8E-127 3 423.1 0.8585462 84-957 874 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)