Contig : dd_Smed_v6_151_0_1 S. mediterranea

Id  dd_Smed_v6_151_0_1 Length  1018    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001036387.1 Drosophila melanogaster Ribosomal protein L5 3.0E-87 78-962 885 1
NP_000960.2 Homo sapiens ribosomal protein L5 7.0E-81 78-938 861 1
NP_058676.1 Mus musculus ribosomal protein L5 2.0E-80 78-938 861 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 567-623 57 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 135-191 57 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 204-260 57 1
G3DSA:3.30.420.100 GENE3D   7.6E-81 111-824 714 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 507-563 57 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 327-386 60 1
PR00058 PRINTS IPR005485 Ribosomal protein L5 signature 2.21E-64 690-749 60 1
SSF53137 SSF Translational machinery components 1.05E-58 111-410 300 1
PF00861 PFAM IPR005484 Ribosomal L18p/L5e family 1.9E-43 153-590 438 1
SSF53137 SSF Translational machinery components 1.05E-58 492-824 333 1
PTHR23410 PANTHER IPR005485 RIBOSOMAL PROTEIN L5-RELATED 7.8E-181 81-959 879 1
PF14204 PFAM IPR025607 Ribosomal L18 C-terminal region 3.3E-26 648-917 270 1

3 ORFs

Contig Location Length Strand Sequence
78-965 888 1
537-683 147 -1
373-477 105 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300044 4.8E-127 3 423.1 0.8585462 84-957 874 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)