Contig : dd_Smed_v6_15147_0_1 S. mediterranea

Id  dd_Smed_v6_15147_0_1 Length  1885    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

1 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005111269.1 Aplysia californica CX3C chemokine receptor 1-like 1.0E-8 394-1170 777 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.20.1070.10 GENE3D IPR017452 Rhopdopsin 7-helix transmembrane proteins 2.0E-6 460-1224 765 1
SSF81321 SSF Family A G protein-coupled receptor-like 1.28E-11 364-1236 873 1
PS50262 PROFILE IPR017452 G-protein coupled receptors family 1 profile. 8.877 496-1323 828 1

5 ORFs

Contig Location Length Strand Sequence
145-1599 1455 1
1591-1770 180 -1
1653-1829 177 -1
3-104 102 1
1011-1112 102 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)