Transcript : dd_Smed_v6_15147_0_1 S. mediterranea

Length  1885     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

1 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005111269.1 Aplysia californica CX3C chemokine receptor 1-like 1.0E-8 394-1170 777 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.20.1070.10 GENE3D IPR017452 Rhopdopsin 7-helix transmembrane proteins 2.0E-6 460-1224 765 1
SSF81321 SSF Family A G protein-coupled receptor-like 1.28E-11 364-1236 873 1
PS50262 PROFILE IPR017452 G-protein coupled receptors family 1 profile. 8.877 496-1323 828 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
145-1599 1455 1
1591-1770 180 -1
1653-1829 177 -1
3-104 102 1
1011-1112 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)