Transcript : dd_Smed_v6_150_0_1 S. mediterranea

Length  677     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967552.1, clone NBE.1.07G mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_477161.1 Drosophila melanogaster Ribosomal protein L9 2.0E-66 68-604 537 1
NP_035422.1 Mus musculus ribosomal protein L9 7.0E-64 68-604 537 1
NP_000652.2 Homo sapiens ribosomal protein L9 1.0E-63 68-604 537 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00347 PFAM IPR020040 Ribosomal protein L6 1.4E-13 101-316 216 1
G3DSA:3.90.930.12 GENE3D IPR020040   4.2E-26 83-316 234 1
PTHR11655 PANTHER IPR000702 60S/50S RIBOSOMAL PROTEIN L6/L9 1.8E-89 68-601 534 1
PF00347 PFAM IPR020040 Ribosomal protein L6 8.1E-11 353-586 234 1
SSF56053 SSF IPR020040 Ribosomal protein L6 1.44E-25 323-601 279 1
G3DSA:3.90.930.12 GENE3D IPR020040   1.9E-37 323-607 285 1
PTHR11655:SF16 PANTHER 60S RIBOSOMAL PROTEIN L9 1.8E-89 68-601 534 1
SSF56053 SSF IPR020040 Ribosomal protein L6 1.7E-20 68-316 249 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
68-619 552 1
37-258 222 -1
477-677 201 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300033 5.0E-90 2 301.2 0.78581977 75-606 532 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)