Contig : dd_Smed_v6_150_0_1 S. mediterranea

Id  dd_Smed_v6_150_0_1 Length  677    Open in Genome Browser

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Homologue Displayer

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_477161.1 Drosophila melanogaster Ribosomal protein L9 2.0E-66 68-604 537 1
NP_035422.1 Mus musculus ribosomal protein L9 7.0E-64 68-604 537 1
NP_000652.2 Homo sapiens ribosomal protein L9 1.0E-63 68-604 537 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00347 PFAM IPR020040 Ribosomal protein L6 1.4E-13 101-316 216 1
G3DSA:3.90.930.12 GENE3D IPR020040   4.2E-26 83-316 234 1
PTHR11655 PANTHER IPR000702 60S/50S RIBOSOMAL PROTEIN L6/L9 1.8E-89 68-601 534 1
PF00347 PFAM IPR020040 Ribosomal protein L6 8.1E-11 353-586 234 1
SSF56053 SSF IPR020040 Ribosomal protein L6 1.44E-25 323-601 279 1
G3DSA:3.90.930.12 GENE3D IPR020040   1.9E-37 323-607 285 1
PTHR11655:SF16 PANTHER 60S RIBOSOMAL PROTEIN L9 1.8E-89 68-601 534 1
SSF56053 SSF IPR020040 Ribosomal protein L6 1.7E-20 68-316 249 1

3 ORFs

Contig Location Length Strand Sequence
68-619 552 1
37-258 222 -1
477-677 201 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300033 5.0E-90 2 301.2 0.78581977 75-606 532 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)