Contig : dd_Smed_v6_1508_0_1 S. mediterranea

Id  dd_Smed_v6_1508_0_1 Length  615    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_501664.1 Yarrowia lipolytica CLIB122 YALI0C09988p 6.0E-74 102-569 468 1
NP_595664.1 Schizosaccharomyces pombe 972h- cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp2 2.0E-73 90-572 483 1
XP_002129564.1 Ciona intestinalis peptidyl-prolyl cis-trans isomerase-like 4.0E-73 96-572 477 1

11 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.40.100.10 GENE3D IPR029000 Cyclophilin 1.7E-74 87-569 483 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 2.65E-37 411-446 36 1
PF00160 PFAM IPR002130 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7.3E-47 105-563 459 1
PS00170 PROSITE IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 0.0 222-272 51 1
SSF50891 SSF IPR029000 Cyclophilin-like 6.43E-72 78-569 492 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 2.65E-37 450-494 45 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 2.65E-37 150-194 45 1
PTHR11071 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2.9E-109 96-569 474 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 2.65E-37 366-410 45 1
PS50072 PROFILE IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 46.388 102-566 465 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 2.65E-37 237-272 36 1

5 ORFs

Contig Location Length Strand Sequence
69-572 504 1
121-444 324 1
36-356 321 -1
413-613 201 -1
158-262 105 -1

15 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351326 7.6E-62 3 208.7 0.7869919 87-570 484 1
TF324493 6.4E-95 3 317.7 0.78211385 90-570 481 1
TF312801 2.6E-122 3 408.3 0.7723577 96-570 475 1
TF318563 4.8E-73 3 245.6 0.8406504 96-612 517 1
TF314797 4.7E-54 3 181.5 0.704065 96-528 433 1
TF354259 2.3E-107 3 358.4 0.8113821 102-600 499 1
TF312958 2.8E-69 3 233.1 0.7626016 102-570 469 1
TF313817 4.2E-97 3 325.6 0.7528455 108-570 463 1
TF300200 1.7E-56 3 190.8 0.62601626 129-513 385 1
TF105686 8.5E-49 3 164.9 0.6211382 129-510 382 1
TF352224 1.2E-46 3 158.6 0.6211382 135-516 382 1
TF300854 1.1E-42 3 145.4 0.69430894 135-561 427 1
TF351865 1.5E-25 3 89.4 0.6113821 135-510 376 1
TF316719 8.4E-82 3 274.2 0.6601626 165-570 406 1
TF105935 8.4E-27 3 92.7 0.4113821 222-474 253 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)