Transcript : dd_Smed_v6_15033_0_1 S. mediterranea

Length  3215     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006714302.1 Homo sapiens protocadherin 18 1.0E-73 48-2087 2040 1
XP_005503743.1 Columba livia protocadherin gamma subfamily B, 1 4.0E-79 186-2426 2241 1
XP_008273747.1 Stegastes partitus protocadherin 20 3.0E-78 180-2426 2247 1

45 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 777-806 30 1
SSF49313 SSF IPR015919 Cadherin-like 1.06E-27 1449-1799 351 1
SM00112 SMART IPR002126 Cadherin repeats. 1.4E-6 1221-1478 258 1
SM00112 SMART IPR002126 Cadherin repeats. 0.049 2220-2447 228 1
SM00112 SMART IPR002126 Cadherin repeats. 6.1E-11 567-806 240 1
SM00112 SMART IPR002126 Cadherin repeats. 5.0E-17 879-1133 255 1
SSF49313 SSF IPR015919 Cadherin-like 3.14E-9 1176-1463 288 1
SM00112 SMART IPR002126 Cadherin repeats. 6.9E-22 1860-2138 279 1
SM00112 SMART IPR002126 Cadherin repeats. 0.31 150-494 345 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 9.7E-24 489-803 315 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 7.6E-28 807-1139 333 1
SM00112 SMART IPR002126 Cadherin repeats. 1.1E-20 1551-1787 237 1
PF08266 PFAM IPR013164 Cadherin-like 2.9E-10 183-422 240 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 4.1E-29 1476-1793 318 1
SSF49313 SSF IPR015919 Cadherin-like 2.71E-17 486-791 306 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 20.371 816-1139 324 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 4.3E-21 1809-2132 324 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 1479-1517 39 1
SSF49313 SSF IPR015919 Cadherin-like 1.43E-22 1758-2159 402 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 1422-1478 57 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 14.978 1158-1484 327 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 2091-2141 51 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 312-368 57 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 813-899 87 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 6.5E-14 1173-1472 300 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 19.604 504-812 309 1
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 465-494 30 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 5.9E-11 2136-2423 288 1
SSF49313 SSF IPR015919 Cadherin-like 6.0E-27 777-1148 372 1
PF00028 PFAM IPR002126 Cadherin domain 2.7E-9 516-785 270 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

10 ORFs

Contig Location Length Strand Sequence
3-3128 3126 1
2632-2847 216 1
2720-2887 168 -1
2196-2351 156 -1
1910-2056 147 -1
1155-1271 117 -1
1034-1147 114 -1
1275-1382 108 -1
2144-2248 105 1
2072-2176 105 -1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352008 5.2E-102 3 341.8 0.540591 183-1920 1738 1
TF323983 5.3E-80 3 267.2 0.42581648 459-1827 1369 1
TF330641 3.1E-61 3 204.7 0.41275272 465-1791 1327 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)