Contig : dd_Smed_v6_15033_0_1 S. mediterranea

Id  dd_Smed_v6_15033_0_1 Length  3215    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006714302.1 Homo sapiens protocadherin 18 1.0E-73 48-2087 2040 1
XP_005503743.1 Columba livia protocadherin gamma subfamily B, 1 4.0E-79 186-2426 2241 1
XP_008273747.1 Stegastes partitus protocadherin 20 3.0E-78 180-2426 2247 1

45 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 777-806 30 1
SSF49313 SSF IPR015919 Cadherin-like 1.06E-27 1449-1799 351 1
SM00112 SMART IPR002126 Cadherin repeats. 1.4E-6 1221-1478 258 1
SM00112 SMART IPR002126 Cadherin repeats. 0.049 2220-2447 228 1
SM00112 SMART IPR002126 Cadherin repeats. 6.1E-11 567-806 240 1
SM00112 SMART IPR002126 Cadherin repeats. 5.0E-17 879-1133 255 1
SSF49313 SSF IPR015919 Cadherin-like 3.14E-9 1176-1463 288 1
SM00112 SMART IPR002126 Cadherin repeats. 6.9E-22 1860-2138 279 1
SM00112 SMART IPR002126 Cadherin repeats. 0.31 150-494 345 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 9.7E-24 489-803 315 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 7.6E-28 807-1139 333 1
SM00112 SMART IPR002126 Cadherin repeats. 1.1E-20 1551-1787 237 1
PF08266 PFAM IPR013164 Cadherin-like 2.9E-10 183-422 240 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 4.1E-29 1476-1793 318 1
SSF49313 SSF IPR015919 Cadherin-like 2.71E-17 486-791 306 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 20.371 816-1139 324 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 4.3E-21 1809-2132 324 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 1479-1517 39 1
SSF49313 SSF IPR015919 Cadherin-like 1.43E-22 1758-2159 402 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 1422-1478 57 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 14.978 1158-1484 327 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 2091-2141 51 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 312-368 57 1
PR00205 PRINTS IPR002126 Cadherin signature 7.9E-33 813-899 87 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 6.5E-14 1173-1472 300 1
PS50268 PROFILE IPR002126 Cadherins domain profile. 19.604 504-812 309 1
PS00232 PROSITE IPR020894 Cadherin domain signature. 0.0 465-494 30 1
G3DSA:2.60.40.60 GENE3D IPR002126 Cadherins 5.9E-11 2136-2423 288 1
SSF49313 SSF IPR015919 Cadherin-like 6.0E-27 777-1148 372 1
PF00028 PFAM IPR002126 Cadherin domain 2.7E-9 516-785 270 1

10 ORFs

Contig Location Length Strand Sequence
3-3128 3126 1
2632-2847 216 1
2720-2887 168 -1
2196-2351 156 -1
1910-2056 147 -1
1155-1271 117 -1
1034-1147 114 -1
1275-1382 108 -1
2144-2248 105 1
2072-2176 105 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352008 5.2E-102 3 341.8 0.540591 183-1920 1738 1
TF323983 5.3E-80 3 267.2 0.42581648 459-1827 1369 1
TF330641 3.1E-61 3 204.7 0.41275272 465-1791 1327 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)