Transcript : dd_Smed_v6_15010_0_1 S. mediterranea

Length  1169     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: KT163619.1, slc25a-1 (slc25a-1) mRNA - complete cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003387556.1 Amphimedon queenslandica ADP,ATP carrier protein 3, mitochondrial-like 1.0E-157 77-952 876 1
XP_005107474.1 Aplysia californica ADP,ATP carrier protein 3, mitochondrial-like 4.0E-154 77-952 876 1
NP_001187478.1 Ictalurus punctatus ADP/ATP carrier protein 3 3.0E-144 56-952 897 1

21 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.6E-15 686-952 267 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 7.4E-21 77-367 291 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 3.9E-22 395-673 279 1
SSF103506 SSF IPR023395 Mitochondrial carrier 6.15E-70 80-928 849 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 392-430 39 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 701-748 48 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 21.827 80-358 279 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 22.32 392-667 276 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 134-175 42 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 218-280 63 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 437-490 54 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 86-121 36 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 587-640 54 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 317-352 36 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 18.995 686-943 258 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 95-133 39 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 713-778 66 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 284-343 60 1
G3DSA:1.50.40.10 GENE3D IPR023395 Mitochondrial carrier domain 4.6E-72 77-940 864 1
PTHR24089:SF31 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 3.2E-160 44-952 909 1
PTHR24089 PANTHER FAMILY NOT NAMED 3.2E-160 44-952 909 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
50-973 924 1

6 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300743 1.3E-157 2 525.2 0.7322498 87-942 856 1
TF323211 4.5E-22 2 77.0 0.6655261 96-873 778 1
TF354298 2.3E-41 2 140.4 0.68605644 111-912 802 1
TF314806 2.3E-32 2 110.9 0.4730539 111-663 553 1
TF313492 1.3E-23 2 81.4 0.57057315 111-777 667 1
TF351739 1.7E-20 2 71.7 0.4088965 135-612 478 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)