Contig : dd_Smed_v6_15010_0_1 S. mediterranea

Id  dd_Smed_v6_15010_0_1 Length  1169    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003387556.1 Amphimedon queenslandica ADP,ATP carrier protein-like 1.0E-157 77-952 876 1
XP_005107474.1 Aplysia californica ADP,ATP carrier protein 3, mitochondrial-like 4.0E-154 77-952 876 1
NP_001187478.1 Ictalurus punctatus ADP/ATP carrier protein 3 3.0E-144 56-952 897 1

21 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.6E-15 686-952 267 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 7.4E-21 77-367 291 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 3.9E-22 395-673 279 1
SSF103506 SSF IPR023395 Mitochondrial carrier 6.15E-70 80-928 849 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 392-430 39 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 701-748 48 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 21.827 80-358 279 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 22.32 392-667 276 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 134-175 42 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 218-280 63 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 437-490 54 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 86-121 36 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 587-640 54 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator signature 2.0E-25 317-352 36 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 18.995 686-943 258 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 95-133 39 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 713-778 66 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein signature 1.1E-60 284-343 60 1
G3DSA:1.50.40.10 GENE3D IPR023395 Mitochondrial carrier domain 4.6E-72 77-940 864 1
PTHR24089:SF31 PANTHER ADP,ATP CARRIER PROTEIN-RELATED 3.2E-160 44-952 909 1
PTHR24089 PANTHER FAMILY NOT NAMED 3.2E-160 44-952 909 1

1 ORFs

Contig Location Length Strand Sequence
50-973 924 1

6 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300743 1.3E-157 2 525.2 0.7322498 87-942 856 1
TF323211 4.5E-22 2 77.0 0.6655261 96-873 778 1
TF354298 2.3E-41 2 140.4 0.68605644 111-912 802 1
TF314806 2.3E-32 2 110.9 0.4730539 111-663 553 1
TF313492 1.3E-23 2 81.4 0.57057315 111-777 667 1
TF351739 1.7E-20 2 71.7 0.4088965 135-612 478 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)