Contig : dd_Smed_v6_149_0_1 S. mediterranea

Id  dd_Smed_v6_149_0_1 Length  580    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_733339.1 Drosophila melanogaster Ribosomal protein L32 1.0E-39 122-532 411 1
NP_000985.1 Homo sapiens ribosomal protein L32 8.0E-39 128-532 405 1
XP_003375761.1 Trichinella spiralis 60S ribosomal protein L32 5.0E-42 128-532 405 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23413 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POL 5.8E-59 137-529 393 1
SSF52042 SSF IPR001515 Ribosomal protein L32e 4.32E-48 122-517 396 1
PTHR23413:SF1 PANTHER 60S RIBOSOMAL PROTEIN L32 5.8E-59 137-529 393 1
PF01655 PFAM IPR001515 Ribosomal protein L32 5.6E-41 173-499 327 1

4 ORFs

Contig Location Length Strand Sequence
128-532 405 1
56-355 300 -1
431-580 150 -1
3-128 126 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314947 5.8E-45 2 152.4 0.6431034 159-531 373 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)