Transcript : dd_Smed_v6_149_0_1 S. mediterranea

Length  580     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067203.1, clone H.78.3b unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_733339.1 Drosophila melanogaster Ribosomal protein L32 1.0E-39 122-532 411 1
NP_000985.1 Homo sapiens ribosomal protein L32 8.0E-39 128-532 405 1
XP_003375761.1 Trichinella spiralis 60S ribosomal protein L32 5.0E-42 128-532 405 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR23413 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POL 5.8E-59 137-529 393 1
SSF52042 SSF IPR001515 Ribosomal protein L32e 4.32E-48 122-517 396 1
PTHR23413:SF1 PANTHER 60S RIBOSOMAL PROTEIN L32 5.8E-59 137-529 393 1
PF01655 PFAM IPR001515 Ribosomal protein L32 5.6E-41 173-499 327 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
128-532 405 1
56-355 300 -1
431-580 150 -1
3-128 126 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314947 5.8E-45 2 152.4 0.6431034 159-531 373 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)