Transcript : dd_Smed_v6_14880_0_1 S. mediterranea

Length  531     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611878.1 Drosophila melanogaster CG3186 gene product from transcript CG3186-RB 8.0E-50 37-501 465 1
XP_002165574.2 Hydra vulgaris eukaryotic translation initiation factor 5A-like 2.0E-54 58-504 447 1
XP_001607976.1 Nasonia vitripennis eukaryotic translation initiation factor 5A 3.0E-53 37-501 465 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 6.85E-20 289-495 207 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 5.3E-25 289-498 210 1
PF01287 PFAM IPR020189 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 2.7E-25 286-489 204 1
G3DSA:2.30.30.30 GENE3D IPR014722   1.8E-33 76-282 207 1
PS00302 PROSITE IPR019769 Eukaryotic initiation factor 5A hypusine signature. 0.0 181-201 21 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 3.71E-23 76-309 234 1
PTHR11673 PANTHER IPR001884 TRANSLATION INITIATION FACTOR 5A-RELATED 2.6E-79 37-501 465 1
TIGR00037 TIGRFAMs IPR001884 eIF_5A: translation elongation factor IF5A 2.3E-40 82-489 408 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
37-504 468 1
191-310 120 1
48-167 120 -1
210-320 111 -1
85-192 108 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101534 7.3E-76 1 255.0 0.8719397 39-501 463 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)