Contig : dd_Smed_v6_14880_0_1 S. mediterranea

Id  dd_Smed_v6_14880_0_1 Length  531    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611878.1 Drosophila melanogaster CG3186 gene product from transcript CG3186-RB 8.0E-50 37-501 465 1
XP_002165574.2 Hydra vulgaris eukaryotic translation initiation factor 5A-like 2.0E-54 58-504 447 1
XP_001607976.1 Nasonia vitripennis eukaryotic translation initiation factor 5A 3.0E-53 37-501 465 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 6.85E-20 289-495 207 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 5.3E-25 289-498 210 1
PF01287 PFAM IPR020189 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 2.7E-25 286-489 204 1
G3DSA:2.30.30.30 GENE3D IPR014722   1.8E-33 76-282 207 1
PS00302 PROSITE IPR019769 Eukaryotic initiation factor 5A hypusine signature. 0.0 181-201 21 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 3.71E-23 76-309 234 1
PTHR11673 PANTHER IPR001884 TRANSLATION INITIATION FACTOR 5A-RELATED 2.6E-79 37-501 465 1
TIGR00037 TIGRFAMs IPR001884 eIF_5A: translation elongation factor IF5A 2.3E-40 82-489 408 1

5 ORFs

Contig Location Length Strand Sequence
37-504 468 1
191-310 120 1
48-167 120 -1
210-320 111 -1
85-192 108 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF101534 7.3E-76 1 255.0 0.8719397 39-501 463 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)