Contig : dd_Smed_v6_1484_0_1 S. mediterranea

Id  dd_Smed_v6_1484_0_1 Length  3100    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_038656.1 Mus musculus proprotein convertase subtilisin/kexin type 1 6.0E-80 876-2507 1632 -1
NP_001171346.1 Homo sapiens proprotein convertase subtilisin/kexin type 1 6.0E-80 876-2507 1632 -1
XP_005107019.1 Aplysia californica PC3-like endoprotease variant B-like 1.0E-94 966-2483 1518 -1

27 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.20.10 GENE3D IPR009072 Histone, subunit A 7.2E-51 96-437 342 1
PR00620 PRINTS IPR002119 Histone H2A signature 8.3E-43 255-293 39 1
PR00620 PRINTS IPR002119 Histone H2A signature 8.3E-43 297-338 42 1
PR00620 PRINTS IPR002119 Histone H2A signature 8.3E-43 210-254 45 1
PF00125 PFAM IPR007125 Core histone H2A/H2B/H3/H4 2.3E-21 132-353 222 1
PTHR23430:SF34 PANTHER HISTONE H2A.V 2.1E-90 75-437 363 1
SM00414 SMART IPR002119 Histone 2A 5.8E-70 87-446 360 1
PR00620 PRINTS IPR002119 Histone H2A signature 8.3E-43 120-185 66 1
SSF47113 SSF IPR009072 Histone-fold 2.93E-41 84-377 294 1
PS00046 PROSITE IPR002119 Histone H2A signature. 0.0 144-161 18 1
PR00620 PRINTS IPR002119 Histone H2A signature 8.3E-43 378-431 54 1
PTHR23430 PANTHER HISTONE H2A 2.1E-90 75-437 363 1
G3DSA:3.40.50.200 GENE3D IPR000209   8.1E-81 1311-2366 1056 -1
PF00082 PFAM IPR000209 Subtilase family 6.4E-41 1332-2234 903 -1
PS00137 PROSITE IPR022398 Serine proteases, subtilase family, histidine active site. 0.0 2049-2078 30 -1
PS00136 PROSITE IPR023827 Serine proteases, subtilase family, aspartic acid active site. 0.0 2199-2231 33 -1
PTHR10795 PANTHER IPR015500 PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2.1E-156 621-2975 2355 -1
G3DSA:2.60.120.260 GENE3D IPR008979 Galactose-binding domain-like 2.5E-31 882-1307 426 -1
PTHR10795:SF340 PANTHER SUBFAMILY NOT NAMED 2.1E-156 621-2975 2355 -1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 9.0E-16 1488-1535 48 -1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 9.0E-16 2190-2246 57 -1
PR00723 PRINTS IPR015500 Subtilisin serine protease family (S8) signature 9.0E-16 2052-2090 39 -1
PS00138 PROSITE IPR023828 Serine proteases, subtilase family, serine active site. 0.0 1503-1532 30 -1
G3DSA:3.30.70.850 GENE3D   1.6E-4 2679-2921 243 -1
SSF52743 SSF IPR000209 Subtilisin-like 4.32E-68 1308-2363 1056 -1
SSF49785 SSF IPR008979 Galactose-binding domain-like 1.91E-27 882-1325 444 -1
PF01483 PFAM IPR002884 Proprotein convertase P-domain 7.5E-18 915-1166 252 -1

14 ORFs

Contig Location Length Strand Sequence
558-2972 2415 -1
75-464 390 1
2522-2821 300 1
2076-2285 210 1
1-183 183 1
2763-2939 177 1
1450-1620 171 1
2475-2645 171 1
1240-1398 159 -1
2833-2958 126 1
366-485 120 -1
1915-2028 114 -1
1853-1960 108 1
680-784 105 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)