Contig : dd_Smed_v6_145_0_1 S. mediterranea

Id  dd_Smed_v6_145_0_1 Length  732    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_001474740.1 Mus musculus predicted gene 10071 4.0E-52 78-677 600 1
NP_150254.1 Homo sapiens ribosomal protein L13 6.0E-51 78-677 600 1
NP_523530.1 Drosophila melanogaster Ribosomal protein L13 3.0E-50 96-677 582 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS01104 PROSITE IPR018256 Ribosomal protein L13e signature. 0.0 285-326 42 1
PTHR11722:SF0 PANTHER 60S RIBOSOMAL PROTEIN L13 2.1E-87 78-677 600 1
PF01294 PFAM IPR001380 Ribosomal protein L13e 2.0E-65 99-629 531 1
PTHR11722 PANTHER IPR001380 60S RIBOSOMAL PROTEIN L13 2.1E-87 78-677 600 1

4 ORFs

Contig Location Length Strand Sequence
78-680 603 1
419-730 312 -1
122-277 156 -1
484-621 138 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300073 1.4E-89 3 300.0 0.8087432 87-678 592 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)