Transcript : dd_Smed_v6_145_0_1 S. mediterranea

Length  732     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067195.1, clone H.43.11a unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_001474740.1 Mus musculus predicted gene 10071 4.0E-52 78-677 600 1
NP_150254.1 Homo sapiens ribosomal protein L13 6.0E-51 78-677 600 1
NP_523530.1 Drosophila melanogaster Ribosomal protein L13 3.0E-50 96-677 582 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS01104 PROSITE IPR018256 Ribosomal protein L13e signature. 0.0 285-326 42 1
PTHR11722:SF0 PANTHER 60S RIBOSOMAL PROTEIN L13 2.1E-87 78-677 600 1
PF01294 PFAM IPR001380 Ribosomal protein L13e 2.0E-65 99-629 531 1
PTHR11722 PANTHER IPR001380 60S RIBOSOMAL PROTEIN L13 2.1E-87 78-677 600 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
78-680 603 1
419-730 312 -1
122-277 156 -1
484-621 138 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300073 1.4E-89 3 300.0 0.8087432 87-678 592 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)