Contig : dd_Smed_v6_144_0_1 S. mediterranea

Id  dd_Smed_v6_144_0_1 Length  675    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_477054.1 Drosophila melanogaster Ribosomal protein L11 8.0E-88 125-631 507 1
XP_006539175.1 Mus musculus ribosomal protein L11 4.0E-86 95-628 534 1
NP_001186731.1 Homo sapiens ribosomal protein L11 2.0E-85 128-628 501 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11994:SF8 PANTHER 60S RIBOSOMAL PROTEIN L11 2.4E-114 128-631 504 1
SSF55282 SSF IPR022803 RL5-like 2.35E-56 131-619 489 1
PF00673 PFAM IPR002132 ribosomal L5P family C-terminus 9.3E-22 302-595 294 1
G3DSA:3.30.1440.10 GENE3D IPR022803   7.4E-78 116-628 513 1
PF00281 PFAM IPR002132 Ribosomal protein L5 9.8E-19 131-289 159 1
PTHR11994 PANTHER IPR002132 60S RIBOSOMAL PROTEIN L11-RELATED 2.4E-114 128-631 504 1
PS00358 PROSITE IPR020929 Ribosomal protein L5 signature. 0.0 221-268 48 1

2 ORFs

Contig Location Length Strand Sequence
95-634 540 1
50-157 108 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300017 6.7E-100 2 333.0 0.7348148 138-633 496 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)