Contig : dd_Smed_v6_1434_0_1 S. mediterranea

Id  dd_Smed_v6_1434_0_1 Length  791    Open in Genome Browser

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Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005104354.1 Aplysia californica myosin heavy chain, striated muscle-like 6.0E-93 119-790 672 1
XP_003145535.1 Loa loa myosin heavy chain 6.0E-83 131-790 660 1
XP_003382837.1 Amphimedon queenslandica myosin heavy chain, striated muscle-like 5.0E-80 191-790 600 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00193 PRINTS IPR001609 Myosin heavy chain signature 4.0E-25 614-688 75 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 4.0E-25 776-790 15 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 4.0E-25 446-502 57 1
PF02736 PFAM IPR004009 Myosin N-terminal SH3-like domain 6.7E-14 203-322 120 1
PF00063 PFAM IPR001609 Myosin head (motor domain) 8.5E-57 365-787 423 1
SM00242 SMART IPR001609 Myosin. Large ATPases. 7.3E-7 338-787 450 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 7.17E-61 269-787 519 1
PTHR13140 PANTHER MYOSIN 5.7E-124 119-787 669 1
PTHR13140:SF364 PANTHER MYOSIN HEAVY CHAIN, ISOFORM O-RELATED 5.7E-124 119-787 669 1

4 ORFs

Contig Location Length Strand Sequence
119-790 672 1
148-372 225 -1
383-562 180 -1
681-791 111 -1

10 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF333601 1.5E-95 2 319.4 0.74462706 201-789 589 1
TF351449 4.4E-41 2 139.2 0.73324907 210-789 580 1
TF333721 1.6E-117 2 393.2 0.72945637 213-789 577 1
TF313515 9.0E-45 2 150.6 0.72945637 213-789 577 1
TF328771 6.4E-55 2 184.8 0.7256637 216-789 574 1
TF339614 3.6E-36 2 123.0 0.551201 273-708 436 1
TF326512 3.0E-36 2 123.7 0.642225 282-789 508 1
TF332267 1.7E-19 2 68.6 0.48293298 324-705 382 1
TF335306 2.0E-41 2 139.1 0.539823 363-789 427 1
TF316834 3.1E-47 2 160.1 0.53603035 366-789 424 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)