Transcript : dd_Smed_v6_1434_0_1 S. mediterranea

Length  791     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_005104354.1 Aplysia californica myosin heavy chain, striated muscle-like 6.0E-93 119-790 672 1
XP_003145535.1 Loa loa myosin heavy chain 6.0E-83 131-790 660 1
XP_003382837.1 Amphimedon queenslandica myosin heavy chain, striated muscle-like 5.0E-80 191-790 600 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00193 PRINTS IPR001609 Myosin heavy chain signature 4.0E-25 614-688 75 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 4.0E-25 776-790 15 1
PR00193 PRINTS IPR001609 Myosin heavy chain signature 4.0E-25 446-502 57 1
PF02736 PFAM IPR004009 Myosin N-terminal SH3-like domain 6.7E-14 203-322 120 1
PF00063 PFAM IPR001609 Myosin head (motor domain) 8.5E-57 365-787 423 1
SM00242 SMART IPR001609 Myosin. Large ATPases. 7.3E-7 338-787 450 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 7.17E-61 269-787 519 1
PTHR13140 PANTHER MYOSIN 5.7E-124 119-787 669 1
PTHR13140:SF364 PANTHER MYOSIN HEAVY CHAIN, ISOFORM O-RELATED 5.7E-124 119-787 669 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
119-790 672 1
148-372 225 -1
383-562 180 -1
681-791 111 -1

10 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF333601 1.5E-95 2 319.4 0.74462706 201-789 589 1
TF351449 4.4E-41 2 139.2 0.73324907 210-789 580 1
TF333721 1.6E-117 2 393.2 0.72945637 213-789 577 1
TF313515 9.0E-45 2 150.6 0.72945637 213-789 577 1
TF328771 6.4E-55 2 184.8 0.7256637 216-789 574 1
TF339614 3.6E-36 2 123.0 0.551201 273-708 436 1
TF326512 3.0E-36 2 123.7 0.642225 282-789 508 1
TF332267 1.7E-19 2 68.6 0.48293298 324-705 382 1
TF335306 2.0E-41 2 139.1 0.539823 363-789 427 1
TF316834 3.1E-47 2 160.1 0.53603035 366-789 424 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)