Contig : dd_Smed_v6_141_0_1 S. mediterranea

Id  dd_Smed_v6_141_0_1 Length  1924    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_511115.2 Drosophila melanogaster Heat shock protein 60 0.0 83-1735 1653 1
NP_002147.2 Homo sapiens heat shock 60kDa protein 1 (chaperonin) 0.0 83-1738 1656 1
NP_034607.3 Mus musculus heat shock protein 1 (chaperonin) 0.0 83-1738 1656 1

16 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF48592 SSF IPR002423 GroEL equatorial domain-like 9.92E-75 167-547 381 1
PF00118 PFAM IPR002423 TCP-1/cpn60 chaperonin family 7.3E-119 215-1717 1503 1
G3DSA:3.50.7.10 GENE3D IPR027409 GroEL 2.6E-88 713-1252 540 1
SSF48592 SSF IPR002423 GroEL equatorial domain-like 9.92E-75 1367-1711 345 1
SSF54849 SSF GroEL-intermediate domain like 3.43E-26 557-757 201 1
TIGR02348 TIGRFAMs IPR001844 GroEL: chaperonin GroL 7.1E-218 155-1723 1569 1
G3DSA:1.10.560.10 GENE3D IPR027413 GROEL, domain 1 2.0E-47 1256-1702 447 1
PS00296 PROSITE IPR018370 Chaperonins cpn60 signature. 0.0 1364-1396 33 1
PR00298 PRINTS IPR001844 60kDa chaperonin signature 5.9E-65 395-475 81 1
PR00298 PRINTS IPR001844 60kDa chaperonin signature 5.9E-65 1343-1405 63 1
PR00298 PRINTS IPR001844 60kDa chaperonin signature 5.9E-65 1199-1273 75 1
PR00298 PRINTS IPR001844 60kDa chaperonin signature 5.9E-65 227-304 78 1
PR00298 PRINTS IPR001844 60kDa chaperonin signature 5.9E-65 950-1018 69 1
SSF52029 SSF IPR027409 GroEL apical domain-like 7.59E-72 698-1276 579 1
PTHR11353 PANTHER IPR002423 CHAPERONIN 1.7E-298 152-1804 1653 1
G3DSA:1.10.560.10 GENE3D IPR027413 GROEL, domain 1 1.6E-47 149-709 561 1

8 ORFs

Contig Location Length Strand Sequence
83-1807 1725 1
373-621 249 -1
1585-1830 246 -1
79-240 162 -1
956-1096 141 -1
1728-1859 132 -1
784-900 117 1
1203-1316 114 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300475 0.0 2 1369.4 0.85654885 156-1803 1648 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)