Transcript : dd_Smed_v6_140_0_1 S. mediterranea

Length  438     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000989.1 Homo sapiens ribosomal protein L37a 6.0E-24 118-306 189 1
XP_002371742.1 Toxoplasma gondii ME49 ribosomal protein L37a 7.0E-26 118-306 189 1
XP_003886054.1 Neospora caninum Liverpool Ribosomal protein L37a, related 1.0E-25 118-306 189 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 1.65E-28 145-354 210 1
TIGR00280 TIGRFAMs IPR002674 L37a: ribosomal protein L37a 2.9E-35 118-381 264 1
PTHR11517 PANTHER 60S RIBOSOMAL PROTEIN L37A 1.4E-50 103-378 276 1
PF01780 PFAM IPR002674 Ribosomal L37ae protein family 4.1E-37 121-378 258 1
G3DSA:2.20.25.30 GENE3D IPR011331   3.5E-37 145-378 234 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
118-387 270 1
259-363 105 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313068 1.3E-37 1 127.2 0.5776256 123-375 253 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)