Contig : dd_Smed_v6_140_0_1 S. mediterranea

Id  dd_Smed_v6_140_0_1 Length  438    Open in Genome Browser

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3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000989.1 Homo sapiens ribosomal protein L37a 6.0E-24 118-306 189 1
XP_002371742.1 Toxoplasma gondii ME49 ribosomal protein L37a 7.0E-26 118-306 189 1
XP_003886054.1 Neospora caninum Liverpool Ribosomal protein L37a, related 1.0E-25 118-306 189 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF57829 SSF IPR011332 Zn-binding ribosomal proteins 1.65E-28 145-354 210 1
TIGR00280 TIGRFAMs IPR002674 L37a: ribosomal protein L37a 2.9E-35 118-381 264 1
PTHR11517 PANTHER 60S RIBOSOMAL PROTEIN L37A 1.4E-50 103-378 276 1
PF01780 PFAM IPR002674 Ribosomal L37ae protein family 4.1E-37 121-378 258 1
G3DSA: GENE3D IPR011331   3.5E-37 145-378 234 1

2 ORFs

Contig Location Length Strand Sequence
118-387 270 1
259-363 105 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313068 1.3E-37 1 127.2 0.5776256 123-375 253 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)