Contig : dd_Smed_v6_13734_0_20 S. mediterranea

Id  dd_Smed_v6_13734_0_20 Length  1217    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003373753.1 Trichinella spiralis reverse transcriptase (RNA-dependent DNA polymerase) subfamily 3.0E-52 178-1212 1035 1
XP_002404862.1 Ixodes scapularis reverse transcriptase, putative 9.0E-49 145-1212 1068 1
NP_001129728.1 Danio rerio zgc:194878 7.0E-39 37-1002 966 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 19.371 274-1110 837 1
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 4.9E-31 343-1107 765 1
PTHR19446:SF310 PANTHER SUBFAMILY NOT NAMED 8.5E-48 145-1152 1008 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 8.5E-48 145-1152 1008 1
SSF56672 SSF DNA/RNA polymerases 3.78E-17 181-1002 822 1

5 ORFs

Contig Location Length Strand Sequence
1-1215 1215 1
3-404 402 -1
408-632 225 -1
735-902 168 -1
1082-1216 135 -1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF321903 1.7E-21 1 74.3 0.7625308 186-1113 928 1
TF330254 1.0E-34 1 118.2 0.6294166 237-1002 766 1
TF334497 2.0E-25 1 86.4 0.5529992 252-924 673 1
TF351901 1.4E-9 1 34.8 0.5209532 270-903 634 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)