Transcript : dd_Smed_v6_13734_0_20 S. mediterranea

Length  1217     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003373753.1 Trichinella spiralis reverse transcriptase (RNA-dependent DNA polymerase) subfamily 3.0E-52 178-1212 1035 1
XP_002404862.1 Ixodes scapularis reverse transcriptase, putative 9.0E-49 145-1212 1068 1
NP_001129728.1 Danio rerio zgc:194878 7.0E-39 37-1002 966 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 19.371 274-1110 837 1
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 4.9E-31 343-1107 765 1
PTHR19446:SF310 PANTHER SUBFAMILY NOT NAMED 8.5E-48 145-1152 1008 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 8.5E-48 145-1152 1008 1
SSF56672 SSF DNA/RNA polymerases 3.78E-17 181-1002 822 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
1-1215 1215 1
3-404 402 -1
408-632 225 -1
735-902 168 -1
1082-1216 135 -1

4 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF321903 1.7E-21 1 74.3 0.7625308 186-1113 928 1
TF330254 1.0E-34 1 118.2 0.6294166 237-1002 766 1
TF334497 2.0E-25 1 86.4 0.5529992 252-924 673 1
TF351901 1.4E-9 1 34.8 0.5209532 270-903 634 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)