Transcript : dd_Smed_v6_13734_0_19 S. mediterranea

Length  1293     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002399423.1 Ixodes scapularis reverse transcriptase, putative 1.0E-30 647-1291 645 1
XP_003369817.1 Trichinella spiralis retrovirus-related protein 3.0E-25 662-1291 630 1
NP_001025268.1 Danio rerio reverse transcriptase 6.0E-23 473-1291 819 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 11.028 791-1291 501 1
PTHR19446:SF310 PANTHER SUBFAMILY NOT NAMED 1.8E-32 104-1288 1185 1
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-12 860-1288 429 1
SSF56672 SSF DNA/RNA polymerases 3.47E-7 635-1246 612 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 1.8E-32 104-1288 1185 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
2-1291 1290 1
367-921 555 -1
925-1149 225 -1
10-147 138 -1
335-454 120 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330254 2.3E-21 2 73.9 0.4184068 750-1290 541 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)