Contig : dd_Smed_v6_13734_0_19 S. mediterranea

Id  dd_Smed_v6_13734_0_19 Length  1293    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002399423.1 Ixodes scapularis reverse transcriptase, putative 1.0E-30 647-1291 645 1
XP_003369817.1 Trichinella spiralis retrovirus-related protein 3.0E-25 662-1291 630 1
NP_001025268.1 Danio rerio reverse transcriptase 6.0E-23 473-1291 819 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 11.028 791-1291 501 1
PTHR19446:SF310 PANTHER SUBFAMILY NOT NAMED 1.8E-32 104-1288 1185 1
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 1.1E-12 860-1288 429 1
SSF56672 SSF DNA/RNA polymerases 3.47E-7 635-1246 612 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 1.8E-32 104-1288 1185 1

5 ORFs

Contig Location Length Strand Sequence
2-1291 1290 1
367-921 555 -1
925-1149 225 -1
10-147 138 -1
335-454 120 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330254 2.3E-21 2 73.9 0.4184068 750-1290 541 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)