Contig : dd_Smed_v6_13734_0_18 S. mediterranea

Id  dd_Smed_v6_13734_0_18 Length  1326    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003373753.1 Trichinella spiralis reverse transcriptase (RNA-dependent DNA polymerase) subfamily 5.0E-54 178-1230 1053 1
XP_002404862.1 Ixodes scapularis reverse transcriptase, putative 2.0E-51 145-1260 1116 1
XP_004339617.1 Acanthamoeba castellanii str. Neff Reverse transcriptase 5.0E-42 142-1275 1134 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 19.371 274-1110 837 1
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 6.3E-31 343-1107 765 1
SSF56672 SSF DNA/RNA polymerases 8.9E-17 181-1002 822 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 1.4E-47 145-1278 1134 1
PTHR19446:SF310 PANTHER SUBFAMILY NOT NAMED 1.4E-47 145-1278 1134 1

4 ORFs

Contig Location Length Strand Sequence
1-1326 1326 1
3-404 402 -1
408-632 225 -1
735-902 168 -1

4 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF321903 2.1E-21 1 74.0 0.6998492 186-1113 928 1
TF330254 1.3E-34 1 117.8 0.57767725 237-1002 766 1
TF334497 2.4E-25 1 86.1 0.5075415 252-924 673 1
TF351901 1.8E-9 1 34.5 0.4781297 270-903 634 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)