Contig : dd_Smed_v6_136_0_1 S. mediterranea
Id  dd_Smed_v6_136_0_1 Length  659    Open in Genome Browser
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This Contig is in 2 lists:
All contigs in dd_Smed (41745)
All contigs for Schmidtea mediterranea (245295)

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001273201.1 Homo sapiens tumor protein, translationally-controlled 1 9.0E-37 82-612 531 1
NP_033455.1 Mus musculus tumor protein, translationally-controlled 1 7.0E-35 82-588 507 1
XP_004349715.1 Capsaspora owczarzaki ATCC 30864 translationally-controlled tumor protein 1.0E-49 82-588 507 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.170.150.10 GENE3D IPR011323 Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 9.2E-65 82-585 504 1
PF00838 PFAM IPR018105 Translationally controlled tumour protein 1.0E-64 82-576 495 1
PS01003 PROSITE IPR018103 Translationally controlled tumor protein signature 2. 0.0 457-522 66 1
PR01653 PRINTS IPR018105 Translationally controlled tumour protein signature 1.2E-15 82-141 60 1
PR01653 PRINTS IPR018105 Translationally controlled tumour protein signature 1.2E-15 256-312 57 1
PS01002 PROSITE IPR018103 Translationally controlled tumor protein signature 1. 0.0 217-246 30 1
PR01653 PRINTS IPR018105 Translationally controlled tumour protein signature 1.2E-15 220-252 33 1
PTHR11991 PANTHER IPR018105 TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED 8.8E-87 85-585 501 1
SSF51316 SSF IPR011057 Mss4-like 6.28E-63 82-585 504 1

3 ORFs

Contig Location Length Strand Sequence
82-588 507 1
152-280 129 1
93-203 111 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300238 2.8E-86 1 289.4 0.7663126 84-588 505 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)