Transcript : dd_Smed_v6_136_0_1 S. mediterranea
Length  659     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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* Evidence
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Lists
This Contig is in 2 lists:
All contigs for Schmidtea mediterranea (241406)
All contigs in dd_Smed (41745)

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001273201.1 Homo sapiens tumor protein, translationally-controlled 1 9.0E-37 82-612 531 1
NP_033455.1 Mus musculus tumor protein, translationally-controlled 1 7.0E-35 82-588 507 1
XP_004349715.1 Capsaspora owczarzaki ATCC 30864 translationally-controlled tumor protein 1.0E-49 82-588 507 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.170.150.10 GENE3D IPR011323 Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 9.2E-65 82-585 504 1
PF00838 PFAM IPR018105 Translationally controlled tumour protein 1.0E-64 82-576 495 1
PS01003 PROSITE IPR018103 Translationally controlled tumor protein signature 2. 0.0 457-522 66 1
PR01653 PRINTS IPR018105 Translationally controlled tumour protein signature 1.2E-15 82-141 60 1
PR01653 PRINTS IPR018105 Translationally controlled tumour protein signature 1.2E-15 256-312 57 1
PS01002 PROSITE IPR018103 Translationally controlled tumor protein signature 1. 0.0 217-246 30 1
PR01653 PRINTS IPR018105 Translationally controlled tumour protein signature 1.2E-15 220-252 33 1
PTHR11991 PANTHER IPR018105 TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED 8.8E-87 85-585 501 1
SSF51316 SSF IPR011057 Mss4-like 6.28E-63 82-585 504 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
82-588 507 1
152-280 129 1
93-203 111 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300238 2.8E-86 1 289.4 0.7663126 84-588 505 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)