Transcript : dd_Smed_v6_13612_0_4 S. mediterranea

Length  2014     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001138161.2 Drosophila melanogaster CG42265 gene product from transcript CG42265-RE 4.0E-63 651-1898 1248 1
XP_001658062.1 Aedes aegypti AAEL006828-PA 4.0E-67 153-1892 1740 1
XP_002009968.1 Drosophila mojavensis GI15657 gene product from transcript GI15657-RA 1.0E-66 651-1898 1248 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03189 PFAM IPR004878 Otopetrin 2.1E-16 657-1010 354 1
PTHR21522 PANTHER IPR004878 OTOPETRIN 9.1E-115 171-1895 1725 1
PTHR21522:SF32 PANTHER PROTEIN OTPL-3 9.1E-115 171-1895 1725 1
PF03189 PFAM IPR004878 Otopetrin 3.4E-65 1032-1838 807 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

9 ORFs

Contig Location Length Strand Sequence
99-1901 1803 1
764-928 165 1
928-1080 153 1
167-313 147 1
1716-1844 129 -1
1891-2013 123 -1
98-214 117 -1
597-704 108 -1
1588-1689 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313428 2.5E-115 3 386.5 0.846574 171-1875 1705 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)