Contig : dd_Smed_v6_13612_0_4 S. mediterranea

Id  dd_Smed_v6_13612_0_4 Length  2014    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001138161.2 Drosophila melanogaster CG42265 gene product from transcript CG42265-RE 4.0E-63 651-1898 1248 1
XP_001658062.1 Aedes aegypti otopetrin 4.0E-67 153-1892 1740 1
XP_002009968.1 Drosophila mojavensis GI15657 gene product from transcript GI15657-RA 1.0E-66 651-1898 1248 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03189 PFAM IPR004878 Otopetrin 2.1E-16 657-1010 354 1
PTHR21522 PANTHER IPR004878 OTOPETRIN 9.1E-115 171-1895 1725 1
PTHR21522:SF32 PANTHER PROTEIN OTPL-3 9.1E-115 171-1895 1725 1
PF03189 PFAM IPR004878 Otopetrin 3.4E-65 1032-1838 807 1

9 ORFs

Contig Location Length Strand Sequence
99-1901 1803 1
764-928 165 1
928-1080 153 1
167-313 147 1
1716-1844 129 -1
1891-2013 123 -1
98-214 117 -1
597-704 108 -1
1588-1689 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313428 2.5E-115 3 386.5 0.846574 171-1875 1705 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)