Transcript : dd_Smed_v6_13612_0_3 S. mediterranea

Length  2020     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001138161.2 Drosophila melanogaster CG42265 gene product from transcript CG42265-RE 5.0E-63 663-1904 1242 1
XP_002009968.1 Drosophila mojavensis GI15657 gene product from transcript GI15657-RA 2.0E-66 663-1904 1242 1
XP_001658062.1 Aedes aegypti AAEL006828-PA 9.0E-66 174-1898 1725 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21522:SF32 PANTHER PROTEIN OTPL-3 1.5E-116 93-1901 1809 1
PF03189 PFAM IPR004878 Otopetrin 3.8E-65 1041-1844 804 1
PF03189 PFAM IPR004878 Otopetrin 1.7E-17 663-1016 354 1
PTHR21522 PANTHER IPR004878 OTOPETRIN 1.5E-116 93-1901 1809 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
51-1907 1857 1
640-795 156 1
612-767 156 -1
934-1086 153 1
1722-1850 129 -1
1897-2019 123 -1
1594-1695 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313428 6.4E-121 3 405.0 0.84257424 180-1881 1702 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)