Contig : dd_Smed_v6_1355_0_1 S. mediterranea

Id  dd_Smed_v6_1355_0_1 Length  753    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611544.1 Drosophila melanogaster CG10527 gene product from transcript CG10527-RA 7.0E-20 306-707 402 1
XP_318631.4 Anopheles gambiae str. PEST AGAP009604-PA 3.0E-21 306-710 405 1
XP_002091593.1 Drosophila yakuba GE13745 gene product from transcript GE13745-RA 2.0E-20 306-707 402 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 9.2E-24 510-716 207 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 2.2E-8 297-488 192 1
PF11901 PFAM IPR024518 Protein of unknown function (DUF3421) 1.3E-32 360-686 327 1
PTHR31649 PANTHER FAMILY NOT NAMED 2.6E-39 279-719 441 1

4 ORFs

Contig Location Length Strand Sequence
255-731 477 1
562-753 192 -1
190-318 129 -1
3-125 123 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF326895 1.7E-33 3 115.2 0.47543162 357-714 358 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)