Transcript : dd_Smed_v6_1355_0_1 S. mediterranea

Length  753     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611544.1 Drosophila melanogaster CG10527 gene product from transcript CG10527-RA 7.0E-20 306-707 402 1
XP_318631.4 Anopheles gambiae str. PEST AGAP009604-PA 3.0E-21 306-710 405 1
XP_002091593.1 Drosophila yakuba GE13745 gene product from transcript GE13745-RA 2.0E-20 306-707 402 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 9.2E-24 510-716 207 1
SM00696 SMART IPR006616 Repeats found in Drosophila proteins. 2.2E-8 297-488 192 1
PF11901 PFAM IPR024518 Protein of unknown function (DUF3421) 1.3E-32 360-686 327 1
PTHR31649 PANTHER FAMILY NOT NAMED 2.6E-39 279-719 441 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
255-731 477 1
562-753 192 -1
190-318 129 -1
3-125 123 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF326895 1.7E-33 3 115.2 0.47543162 357-714 358 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)