Contig : dd_Smed_v6_134_0_1 S. mediterranea

Id  dd_Smed_v6_134_0_1 Length  493    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524315.2 Drosophila melanogaster Ribosomal protein S25 1.0E-17 207-431 225 1
NP_001019.1 Homo sapiens ribosomal protein S25 2.0E-14 207-431 225 1
XP_006543082.1 Mus musculus predicted gene 6988 4.0E-14 207-431 225 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03297 PFAM IPR004977 S25 ribosomal protein 1.5E-39 87-422 336 1
PTHR12850 PANTHER IPR004977 FAMILY NOT NAMED 1.5E-51 90-428 339 1

1 ORFs

Contig Location Length Strand Sequence
87-434 348 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314909 4.4E-54 3 182.7 0.68356997 96-432 337 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)