Contig : dd_Smed_v6_134_0_1 S. mediterranea

Id  dd_Smed_v6_134_0_1 Length  493    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer


GO Displayer


3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524315.2 Drosophila melanogaster Ribosomal protein S25 1.0E-17 207-431 225 1
NP_001019.1 Homo sapiens ribosomal protein S25 2.0E-14 207-431 225 1
XP_006543082.1 Mus musculus predicted gene 6988 4.0E-14 207-431 225 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03297 PFAM IPR004977 S25 ribosomal protein 1.5E-39 87-422 336 1
PTHR12850 PANTHER IPR004977 FAMILY NOT NAMED 1.5E-51 90-428 339 1

1 ORFs

Contig Location Length Strand Sequence
87-434 348 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314909 4.4E-54 3 182.7 0.68356997 96-432 337 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)