Transcript : dd_Smed_v6_134_0_1 S. mediterranea

Length  493     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524315.2 Drosophila melanogaster Ribosomal protein S25 1.0E-17 207-431 225 1
NP_001019.1 Homo sapiens ribosomal protein S25 2.0E-14 207-431 225 1
XP_006543082.1 Mus musculus predicted gene 6988 4.0E-14 207-431 225 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF03297 PFAM IPR004977 S25 ribosomal protein 1.5E-39 87-422 336 1
PTHR12850 PANTHER IPR004977 FAMILY NOT NAMED 1.5E-51 90-428 339 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
87-434 348 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314909 4.4E-54 3 182.7 0.68356997 96-432 337 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)