Transcript : dd_Smed_v6_133_0_1 S. mediterranea

Length  1053     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067044.1, clone H.8.2g unknown mRNA sequence
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Sequence Features

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3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_001263699.1 Aspergillus fischeri NRRL 181 peptidyl-prolyl cis-trans isomerase/cyclophilin, putative 2.0E-74 128-616 489 1
XP_001270773.1 Aspergillus clavatus NRRL 1 peptidyl-prolyl cis-trans isomerase/cyclophilin, putative 2.0E-73 128-616 489 1
XP_754866.1 Aspergillus fumigatus Af293 peptidyl-prolyl cis-trans isomerase/cyclophilin, putative 1.0E-72 128-616 489 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50891 SSF IPR029000 Cyclophilin-like 8.47E-74 128-613 486 1
G3DSA:2.40.100.10 GENE3D IPR029000 Cyclophilin 4.3E-77 137-613 477 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1.43E-39 281-316 36 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1.43E-39 494-538 45 1
PS50072 PROFILE IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 47.267 143-610 468 1
PF00160 PFAM IPR002130 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5.7E-48 152-607 456 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1.43E-39 455-490 36 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1.43E-39 194-238 45 1
PTHR11071 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4.3E-110 143-613 471 1
PS00170 PROSITE IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 0.0 266-316 51 1
PR00153 PRINTS IPR002130 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1.43E-39 410-454 45 1

Genomics

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3 ORFs

Contig Location Length Strand Sequence
128-616 489 1
68-400 333 -1
336-473 138 1

10 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF312801 1.0E-123 2 412.9 0.4539411 138-615 478 1
TF318563 8.2E-73 2 244.8 0.4539411 138-615 478 1
TF324493 5.5E-95 2 317.9 0.45109212 141-615 475 1
TF314797 9.4E-58 2 193.8 0.41120607 141-573 433 1
TF354259 2.0E-110 2 368.6 0.4482431 144-615 472 1
TF312958 4.5E-71 2 239.0 0.4482431 144-615 472 1
TF351326 2.9E-67 2 226.6 0.4482431 144-615 472 1
TF313817 1.0E-101 2 340.9 0.44254512 150-615 466 1
TF300854 5.0E-47 2 159.8 0.40835708 177-606 430 1
TF352224 1.6E-46 2 158.2 0.40550807 177-603 427 1

Expression Information

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To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)