Contig : dd_Smed_v6_1337_0_1 S. mediterranea

Id  dd_Smed_v6_1337_0_1 Length  793    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_733779.1 Homo sapiens S-phase kinase-associated protein 1 7.0E-82 119-607 489 1
NP_477390.1 Drosophila melanogaster CG16983 gene product from transcript CG16983-RD 6.0E-78 119-607 489 1
XP_007899481.1 Callorhinchus milii S-phase kinase-associated protein 1 4.0E-87 119-607 489 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF81382 SSF IPR016072 Skp1 dimerisation domain-like 1.83E-32 371-595 225 1
PF01466 PFAM IPR016072 Skp1 family, dimerisation domain 2.4E-40 371-601 231 1
PF03931 PFAM IPR016073 Skp1 family, tetramerisation domain 1.3E-24 125-313 189 1
SM00512 SMART IPR001232 Found in Skp1 protein family 1.8E-54 119-451 333 1
SSF54695 SSF IPR011333 POZ domain 2.01E-22 122-322 201 1
G3DSA:3.30.710.10 GENE3D IPR011333 Potassium Channel Kv1.1; Chain A 1.6E-74 116-604 489 1
PTHR11165 PANTHER IPR001232 SKP1 1.9E-97 110-604 495 1

3 ORFs

Contig Location Length Strand Sequence
119-607 489 1
464-700 237 -1
103-207 105 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354233 3.2E-112 2 374.9 0.60277426 129-606 478 1
TF300142 6.2E-68 2 228.9 0.5762926 129-585 457 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)