Contig : dd_Smed_v6_13347_0_1 S. mediterranea

Id  dd_Smed_v6_13347_0_1 Length  591    Open in Genome Browser

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Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_038576.1 Mus musculus histone cluster 1, H3f 4.0E-90 50-457 408 1
NP_003520.1 Homo sapiens histone cluster 1, H3a 3.0E-89 50-457 408 1
XP_003202254.1 Meleagris gallopavo histone H3.2-like 3.0E-92 20-457 438 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00622 PRINTS IPR000164 Histone H3 signature 1.9E-85 389-451 63 1
SM00428 SMART IPR000164 Histone H3 9.8E-75 149-454 306 1
SSF47113 SSF IPR009072 Histone-fold 9.39E-57 53-445 393 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.9E-85 149-211 63 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.9E-85 98-139 42 1
PS00322 PROSITE IPR000164 Histone H3 signature 1. 0.0 92-109 18 1
PS00959 PROSITE IPR000164 Histone H3 signature 2. 0.0 248-271 24 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.9E-85 56-97 42 1
G3DSA:1.10.20.10 GENE3D IPR009072 Histone, subunit A 3.6E-85 53-448 396 1
PTHR11426 PANTHER IPR000164 HISTONE H3 1.8E-134 44-454 411 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.9E-85 287-340 54 1
PF00125 PFAM IPR007125 Core histone H2A/H2B/H3/H4 3.9E-33 221-442 222 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.9E-85 221-271 51 1
PR00622 PRINTS IPR000164 Histone H3 signature 1.9E-85 341-388 48 1

2 ORFs

Contig Location Length Strand Sequence
50-457 408 1
38-169 132 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF352440 1.3E-33 2 115.8 0.48392555 156-441 286 1
TF354293 1.9E-67 2 226.3 0.463621 180-453 274 1
TF343899 2.0E-60 5 203.5 0.6937394 48-459 412 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)