Contig : dd_Smed_v6_13327_0_1 S. mediterranea

Id  dd_Smed_v6_13327_0_1 Length  2469    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_032887.3 Mus musculus polycystic kidney disease 2 0.0 159-2216 2058 1
NP_999827.1 Strongylocentrotus purpuratus polycystic kidney disease protein 2 0.0 57-2216 2160 1
NP_001002310.1 Danio rerio polycystic kidney disease 2 0.0 165-2210 2046 1

20 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF08016 PFAM IPR013122 Polycystin cation channel 2.7E-127 408-1664 1257 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 1584-1646 63 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 9.297 1764-1868 105 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 1260-1334 75 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 2085-2138 54 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 1122-1181 60 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 525-581 57 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 1704-1760 57 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 1029-1094 66 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 1401-1463 63 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 6.982 1872-1970 99 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 312-374 63 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 6.4E-9 1755-1979 225 1
PTHR10877:SF105 PANTHER POLYCYSTIC KIDNEY DISEASE 2-LIKE 1 PROTEIN 1.5E-263 138-2081 1944 1
PR01433 PRINTS IPR003915 Polycystic kidney disease type 2 protein (PKD2) signature 4.0E-87 864-929 66 1
PTHR10877 PANTHER POLYCYSTIN-RELATED 1.5E-263 138-2081 1944 1
SSF81324 SSF Voltage-gated potassium channels 1.18E-5 1290-1655 366 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 1803-1838 36 1
SSF47473 SSF EF-hand 3.56E-9 1761-2123 363 1
SSF81324 SSF Voltage-gated potassium channels 1.18E-5 1041-1175 135 1

8 ORFs

Contig Location Length Strand Sequence
45-2351 2307 1
2319-2468 150 -1
55-192 138 1
1973-2098 126 -1
1214-1336 123 -1
1064-1180 117 -1
583-699 117 -1
1813-1926 114 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)