Transcript : dd_Smed_v6_1331_0_1 S. mediterranea

Length  1652     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967631.1, clone NBE.5.05E mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_727960.1 Drosophila melanogaster Dorsal switch protein 1 6.0E-45 561-1037 477 1
XP_006544718.1 Mus musculus high mobility group protein B1-like 4.0E-41 552-1040 489 1
XP_005104049.1 Aplysia californica high mobility group protein B1-like 2.0E-54 549-1043 495 1

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR13711 PANTHER SWI/SNF-RELATED CHROMATIN BINDING PROTEIN 7.5E-64 549-1235 687 1
PS50118 PROFILE IPR009071 HMG boxes A and B DNA-binding domains profile. 16.48 564-773 210 1
G3DSA:1.10.30.10 GENE3D IPR009071 DNA Binding (I), subunit A 2.6E-23 561-782 222 1
PF00505 PFAM IPR009071 HMG (high mobility group) box 1.7E-18 837-1034 198 1
PF09011 PFAM IPR009071 HMG-box domain 2.7E-22 558-770 213 1
PR00886 PRINTS High mobility group (HMG1/HMG2) protein signature 3.84E-15 657-722 66 1
PR00886 PRINTS High mobility group (HMG1/HMG2) protein signature 3.84E-15 936-992 57 1
G3DSA:1.10.30.10 GENE3D IPR009071 DNA Binding (I), subunit A 1.8E-19 810-1040 231 1
PS50118 PROFILE IPR009071 HMG boxes A and B DNA-binding domains profile. 17.049 837-1034 198 1
SSF47095 SSF IPR009071 HMG-box 1.96E-21 801-1037 237 1
SM00398 SMART IPR009071 high mobility group 4.9E-19 561-776 216 1
SM00398 SMART IPR009071 high mobility group 6.5E-19 834-1037 204 1
PR00886 PRINTS High mobility group (HMG1/HMG2) protein signature 3.84E-15 882-935 54 1
SSF47095 SSF IPR009071 HMG-box 2.88E-22 546-779 234 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
534-1412 879 1
1046-1285 240 -1
666-905 240 -1
205-357 153 1
1419-1559 141 1
979-1095 117 1
180-281 102 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)