Contig : dd_Smed_v6_13134_0_1 S. mediterranea

Id  dd_Smed_v6_13134_0_1 Length  1302    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_077173.1 Mus musculus solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 1.0E-106 199-1098 900 1
NP_003553.2 Homo sapiens solute carrier family 25 (mitochondrial carrier. oxoglutarate carrier), member 11 6.0E-106 229-1098 870 1
XP_005091215.1 Aplysia californica mitochondrial 2-oxoglutarate/malate carrier protein-like 5.0E-113 238-1110 873 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00153 PFAM IPR018108 Mitochondrial carrier protein 4.8E-19 820-1086 267 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 8.9E-21 238-504 267 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.1E-15 520-798 279 1
G3DSA:1.50.40.10 GENE3D IPR023395 Mitochondrial carrier domain 8.8E-76 232-1080 849 1
PTHR24089 PANTHER FAMILY NOT NAMED 1.5E-137 202-1092 891 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 22.556 517-789 273 1
SSF103506 SSF IPR023395 Mitochondrial carrier 7.59E-73 229-1074 846 1
PTHR24089:SF86 PANTHER MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER PROTEI 1.5E-137 202-1092 891 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 26.353 817-1083 267 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 24.208 226-492 267 1

5 ORFs

Contig Location Length Strand Sequence
205-1119 915 1
666-896 231 -1
265-381 117 -1
488-598 111 1
299-403 105 1

6 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354262 7.6E-162 1 539.0 0.6735791 228-1104 877 1
TF323211 7.3E-82 1 274.6 0.6528418 240-1089 850 1
TF313209 1.4E-28 1 99.4 0.59984636 240-1020 781 1
TF324506 2.3E-49 1 167.1 0.6505376 243-1089 847 1
TF354328 2.1E-63 1 213.3 0.59984636 294-1074 781 1
TF312920 1.4E-70 1 237.2 0.5330261 381-1074 694 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)