Transcript : dd_Smed_v6_13134_0_1 S. mediterranea

Length  1302     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: KT163639.1, slc25a-21 (slc25a-21) mRNA - complete cds
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_077173.1 Mus musculus solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 1.0E-106 199-1098 900 1
NP_003553.2 Homo sapiens solute carrier family 25 member 11 6.0E-106 229-1098 870 1
XP_005091215.1 Aplysia californica mitochondrial 2-oxoglutarate/malate carrier protein-like 5.0E-113 238-1110 873 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00153 PFAM IPR018108 Mitochondrial carrier protein 4.8E-19 820-1086 267 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 8.9E-21 238-504 267 1
PF00153 PFAM IPR018108 Mitochondrial carrier protein 1.1E-15 520-798 279 1
G3DSA:1.50.40.10 GENE3D IPR023395 Mitochondrial carrier domain 8.8E-76 232-1080 849 1
PTHR24089 PANTHER FAMILY NOT NAMED 1.5E-137 202-1092 891 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 22.556 517-789 273 1
SSF103506 SSF IPR023395 Mitochondrial carrier 7.59E-73 229-1074 846 1
PTHR24089:SF86 PANTHER MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER PROTEI 1.5E-137 202-1092 891 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 26.353 817-1083 267 1
PS50920 PROFILE IPR018108 Solute carrier (Solcar) repeat profile. 24.208 226-492 267 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
205-1119 915 1
666-896 231 -1
265-381 117 -1
488-598 111 1
299-403 105 1

6 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354262 7.6E-162 1 539.0 0.6735791 228-1104 877 1
TF323211 7.3E-82 1 274.6 0.6528418 240-1089 850 1
TF313209 1.4E-28 1 99.4 0.59984636 240-1020 781 1
TF324506 2.3E-49 1 167.1 0.6505376 243-1089 847 1
TF354328 2.1E-63 1 213.3 0.59984636 294-1074 781 1
TF312920 1.4E-70 1 237.2 0.5330261 381-1074 694 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)