Transcript : dd_Smed_v6_130_0_1 S. mediterranea

Length  812     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067213.1, clone HB.6.8f unknown mRNA sequence
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_894815.1 Mus musculus predicted gene 5621 8.0E-112 99-731 633 1
NP_651954.3 Drosophila melanogaster Ribosomal protein L10 6.0E-109 99-728 630 1
XP_005108638.1 Aplysia californica 60S ribosomal protein L10 4.0E-117 99-740 642 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11726 PANTHER 60S RIBOSOMAL PROTEIN L10 2.9E-180 102-746 645 1
PF00252 PFAM IPR016180 Ribosomal protein L16p/L10e 2.7E-30 111-593 483 1
SSF54686 SSF IPR016180 Ribosomal protein L16p/L10e 2.49E-75 108-614 507 1
G3DSA:3.90.1170.10 GENE3D IPR016180   4.7E-92 108-614 507 1
PS01257 PROSITE IPR018255 Ribosomal protein L10e signature. 0.0 420-482 63 1
TIGR00279 TIGRFAMs IPR001197 L10e: ribosomal protein L10.e 3.4E-73 99-608 510 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
99-752 654 1
587-811 225 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300082 5.5E-153 3 509.2 0.76600987 111-732 622 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)