Contig : dd_Smed_v6_12_0_1 S. mediterranea

Id  dd_Smed_v6_12_0_1 Length  696    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_525065.1 Drosophila melanogaster ciboulot 4.0E-8 398-598 201 1
XP_005091491.1 Aplysia californica gelsolin-related protein of 125 kDa-like 7.0E-10 392-595 204 1
XP_002106091.1 Drosophila simulans GD16670 gene product from transcript GD16670-RA 4.0E-8 398-598 201 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00152 SMART IPR001152 Thymosin beta actin-binding motif. 0.17 503-601 99 1
G3DSA:1.20.5.520 GENE3D IPR001152 Single helix bin 3.4E-12 386-487 102 1
G3DSA:1.20.5.520 GENE3D IPR001152 Single helix bin 7.1E-10 530-598 69 1
PTHR20940:SF1 PANTHER CIBOULOT, ISOFORM A 2.7E-13 365-592 228 1
PTHR20940 PANTHER TETRA THYMOSIN 2.7E-13 365-592 228 1
PF01290 PFAM IPR001152 Thymosin beta-4 family 3.5E-12 380-490 111 1
PF01290 PFAM IPR001152 Thymosin beta-4 family 1.0E-10 509-598 90 1
SM00152 SMART IPR001152 Thymosin beta actin-binding motif. 1.6E-6 389-496 108 1

5 ORFs

Contig Location Length Strand Sequence
355-696 342 -1
63-311 249 -1
365-604 240 1
458-601 144 -1
181-315 135 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)