Transcript : dd_Smed_v6_12_0_1 S. mediterranea

Length  696     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_525065.1 Drosophila melanogaster ciboulot 4.0E-8 398-598 201 1
XP_005091491.1 Aplysia californica gelsolin-related protein of 125 kDa-like 7.0E-10 392-595 204 1
XP_002106091.1 Drosophila simulans GD16670 gene product from transcript GD16670-RA 4.0E-8 398-598 201 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00152 SMART IPR001152 Thymosin beta actin-binding motif. 0.17 503-601 99 1
G3DSA:1.20.5.520 GENE3D IPR001152 Single helix bin 3.4E-12 386-487 102 1
G3DSA:1.20.5.520 GENE3D IPR001152 Single helix bin 7.1E-10 530-598 69 1
PTHR20940:SF1 PANTHER CIBOULOT, ISOFORM A 2.7E-13 365-592 228 1
PTHR20940 PANTHER TETRA THYMOSIN 2.7E-13 365-592 228 1
PF01290 PFAM IPR001152 Thymosin beta-4 family 3.5E-12 380-490 111 1
PF01290 PFAM IPR001152 Thymosin beta-4 family 1.0E-10 509-598 90 1
SM00152 SMART IPR001152 Thymosin beta actin-binding motif. 1.6E-6 389-496 108 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
355-696 342 -1
63-311 249 -1
365-604 240 1
458-601 144 -1
181-315 135 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)