Contig : dd_Smed_v6_12986_0_1 S. mediterranea

Id  dd_Smed_v6_12986_0_1 Length  2081    Open in Genome Browser

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Planmine Rnai Result Displayer

Planmine Anatomy Displayer

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Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001138160.2 Drosophila melanogaster CG42265 gene product from transcript CG42265-RE 1.0E-64 760-1998 1239 1
XP_001658062.1 Aedes aegypti otopetrin 2.0E-68 271-1998 1728 1
XP_002009968.1 Drosophila mojavensis GI15657 gene product from transcript GI15657-RA 1.0E-67 760-1998 1239 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21522:SF32 PANTHER PROTEIN OTPL-3 2.4E-111 256-1995 1740 1
PF03189 PFAM IPR004878 Otopetrin 7.4E-59 1150-1950 801 1
PTHR21522 PANTHER IPR004878 OTOPETRIN 2.4E-111 256-1995 1740 1
PF03189 PFAM IPR004878 Otopetrin 1.1E-18 784-1140 357 1

6 ORFs

Contig Location Length Strand Sequence
163-2019 1857 1
1443-1631 189 -1
464-598 135 -1
203-325 123 1
456-575 120 -1
1064-1177 114 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313428 1.8E-113 1 380.3 0.8164344 291-1989 1699 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)