Transcript : dd_Smed_v6_12986_0_1 S. mediterranea

Length  2081     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001138160.2 Drosophila melanogaster CG42265 gene product from transcript CG42265-RE 1.0E-64 760-1998 1239 1
XP_001658062.1 Aedes aegypti AAEL006828-PA 2.0E-68 271-1998 1728 1
XP_002009968.1 Drosophila mojavensis GI15657 gene product from transcript GI15657-RA 1.0E-67 760-1998 1239 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21522:SF32 PANTHER PROTEIN OTPL-3 2.4E-111 256-1995 1740 1
PF03189 PFAM IPR004878 Otopetrin 7.4E-59 1150-1950 801 1
PTHR21522 PANTHER IPR004878 OTOPETRIN 2.4E-111 256-1995 1740 1
PF03189 PFAM IPR004878 Otopetrin 1.1E-18 784-1140 357 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
163-2019 1857 1
1443-1631 189 -1
464-598 135 -1
203-325 123 1
456-575 120 -1
1064-1177 114 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313428 1.8E-113 1 380.3 0.8164344 291-1989 1699 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)