Transcript : dd_Smed_v6_1291_0_1 S. mediterranea

Length  578     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003382497.1 Amphimedon queenslandica cell number regulator 3-like 5.0E-19 166-480 315 1
XP_002735762.1 Saccoglossus kowalevskii cell number regulator 11-like 1.0E-18 175-486 312 1
XP_005110122.1 Aplysia californica cell number regulator 10-like 4.0E-18 175-483 309 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR15907 PANTHER FAMILY NOT NAMED 5.1E-26 166-462 297 1
TIGR01571 TIGRFAMs IPR006461 A_thal_Cys_rich: uncharacterized Cys-rich domain 2.6E-20 169-450 282 1
PF04749 PFAM IPR006461 PLAC8 family 6.5E-20 175-444 270 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
166-486 321 1
141-257 117 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330308 1.9E-30 1 105.4 0.47923875 177-453 277 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)