Contig : dd_Smed_v6_1291_0_1 S. mediterranea

Id  dd_Smed_v6_1291_0_1 Length  578    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer


GO Displayer


3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003382497.1 Amphimedon queenslandica cell number regulator 3-like 5.0E-19 166-480 315 1
XP_002735762.1 Saccoglossus kowalevskii cell number regulator 11-like 1.0E-18 175-486 312 1
XP_005110122.1 Aplysia californica cell number regulator 10-like 4.0E-18 175-483 309 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR15907 PANTHER FAMILY NOT NAMED 5.1E-26 166-462 297 1
TIGR01571 TIGRFAMs IPR006461 A_thal_Cys_rich: uncharacterized Cys-rich domain 2.6E-20 169-450 282 1
PF04749 PFAM IPR006461 PLAC8 family 6.5E-20 175-444 270 1

2 ORFs

Contig Location Length Strand Sequence
166-486 321 1
141-257 117 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330308 1.9E-30 1 105.4 0.47923875 177-453 277 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)