Contig : dd_Smed_v6_128_0_1 S. mediterranea

Id  dd_Smed_v6_128_0_1 Length  680    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000970.1 Homo sapiens ribosomal protein L18 1.0E-58 59-562 504 1
NP_648091.1 Drosophila melanogaster Ribosomal protein L18 5.0E-57 59-562 504 1
XP_002647196.1 Caenorhabditis briggsae C. briggsae CBR-RPL-18 protein 2.0E-64 59-562 504 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52080 SSF IPR021131 Ribosomal proteins L15p and L18e 3.6E-19 119-469 351 1
G3DSA:3.100.10.10 GENE3D   1.2E-14 149-469 321 1
PF00828 PFAM IPR021131 Ribosomal protein L18e/L15 3.6E-16 125-418 294 1
PTHR10934 PANTHER IPR000039 60S RIBOSOMAL PROTEIN L18 1.7E-96 53-616 564 1

4 ORFs

Contig Location Length Strand Sequence
59-619 561 1
473-679 207 -1
77-187 111 -1
117-224 108 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300202 5.7E-90 2 300.4 0.81764704 63-618 556 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)