Transcript : dd_Smed_v6_128_0_1 S. mediterranea

Length  680     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967634.1, clone NBE.5.07F mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000970.1 Homo sapiens ribosomal protein L18 1.0E-58 59-562 504 1
NP_648091.1 Drosophila melanogaster Ribosomal protein L18 5.0E-57 59-562 504 1
XP_002647196.1 Caenorhabditis briggsae C. briggsae CBR-RPL-18 protein 2.0E-64 59-562 504 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52080 SSF IPR021131 Ribosomal proteins L15p and L18e 3.6E-19 119-469 351 1
G3DSA:3.100.10.10 GENE3D   1.2E-14 149-469 321 1
PF00828 PFAM IPR021131 Ribosomal protein L18e/L15 3.6E-16 125-418 294 1
PTHR10934 PANTHER IPR000039 60S RIBOSOMAL PROTEIN L18 1.7E-96 53-616 564 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
59-619 561 1
473-679 207 -1
77-187 111 -1
117-224 108 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300202 5.7E-90 2 300.4 0.81764704 63-618 556 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)