Contig : dd_Smed_v6_127_0_1 S. mediterranea

Id  dd_Smed_v6_127_0_1 Length  1360    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000958.1 Homo sapiens ribosomal protein L3 0.0 73-1293 1221 1
NP_524316.1 Drosophila melanogaster Ribosomal protein L3 0.0 73-1293 1221 1
NP_038790.2 Mus musculus ribosomal protein L3 0.0 73-1293 1221 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50447 SSF IPR009000 Translation proteins 1.94E-101 82-936 855 1
PF00297 PFAM IPR000597 Ribosomal protein L3 7.7E-108 220-1134 915 1
SSF50447 SSF IPR009000 Translation proteins 1.94E-101 1021-1215 195 1
G3DSA:3.30.1430.10 GENE3D   2.6E-47 355-693 339 1
PS00474 PROSITE IPR019926 Ribosomal protein L3 signature. 0.0 706-774 69 1
G3DSA:2.40.30.10 GENE3D Translation factors 1.7E-11 202-351 150 1
G3DSA:2.40.30.10 GENE3D Translation factors 6.0E-46 769-1215 447 1
PTHR11363 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 5.4E-293 64-1281 1218 1

7 ORFs

Contig Location Length Strand Sequence
73-1314 1242 1
943-1149 207 -1
1221-1358 138 -1
475-612 138 -1
1062-1184 123 -1
612-734 123 -1
101-217 117 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300555 1.2E-233 1 775.8 0.8985294 78-1299 1222 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)