Transcript : dd_Smed_v6_127_0_1 S. mediterranea

Length  1360     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
mRNA: KY348678.1, hypothetical protein Smed-rpl3 mRNA - complete cds
EST: AY067204.1, clone H.85.11g(T3) unknown mRNA sequence
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000958.1 Homo sapiens ribosomal protein L3 0.0 73-1293 1221 1
NP_524316.1 Drosophila melanogaster Ribosomal protein L3 0.0 73-1293 1221 1
NP_038790.2 Mus musculus ribosomal protein L3 0.0 73-1293 1221 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50447 SSF IPR009000 Translation proteins 1.94E-101 82-936 855 1
PF00297 PFAM IPR000597 Ribosomal protein L3 7.7E-108 220-1134 915 1
SSF50447 SSF IPR009000 Translation proteins 1.94E-101 1021-1215 195 1
G3DSA:3.30.1430.10 GENE3D   2.6E-47 355-693 339 1
PS00474 PROSITE IPR019926 Ribosomal protein L3 signature. 0.0 706-774 69 1
G3DSA:2.40.30.10 GENE3D Translation factors 1.7E-11 202-351 150 1
G3DSA:2.40.30.10 GENE3D Translation factors 6.0E-46 769-1215 447 1
PTHR11363 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 5.4E-293 64-1281 1218 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
73-1314 1242 1
943-1149 207 -1
1221-1358 138 -1
475-612 138 -1
1062-1184 123 -1
612-734 123 -1
101-217 117 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300555 1.2E-233 1 775.8 0.8985294 78-1299 1222 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)